| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1876 |
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| Symbol | |
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| ID | 4786756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 2004181 |
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| End bp | 2005608 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640090446 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001021069 |
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| Protein GI | 124267065 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.111027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAGTC CCGCCCCCCG CCTGATGGGC TTCGGCCGCG CGCTGCTGGC CGGGCTGGAG
CGCACCCGCC TCTGGCTCGA ACCGCTGACG AAGCGGGTGT TCGGCCCGGT GGCGCCGTCC
GCCGCGGTGG GCAGCACCGG CTACGAGGCA GAGCCCGAGG CCTTGCTGGC CCGCGCCCGC
ACTCAGCGGG CACAGGTGAT CGTGCGGGCC GCGGTCTGCG TGGTCGCGGT GCTGCTGGTC
TGGGCTGCGC TCGCCCGGAT CGACGAGGTG ACACGCGGTG ACGGCAAGGT GATCCCGTCG
CGGCAGTTGC AGGTGATCCA GTCGCTCGAT GGCGGGGTGG TGTCTGAGAT CCTGGTCAAG
GAGGGCCAGG TGGTCGAGGC TGGCCAGCTG CTGTTGCGCA TCGACGAGAC GCGCGCCACG
TCGGGGGTGC GCGAGAACGC CGCGCAGAGC TTCGCGCTGC TGGCCCGGCA GGCCCGGCTG
CGTGCGCTGG CCGAGGGCAA CCCGTTTCAG CCGCCCCCGC CGAGCAAGGA CCCGGAAGAG
CGCCGCATCA TCGAGGAGGA ACGCCGACTC TACGAGTCGC GCCAGTCCGA GCTCTCGACC
ATCGTGTCGA TCAGCCGTCA GCAGCTGATG CAGCGCGAGC AGGAGCTCAA CGAGGCCCGC
TCGCGCCGCG CCTCGGCCGA ACGGGGTCTG GACCTGTCGC AGCAGGAGCT GGCGAAGACG
CGGCCGCTGC TGGCCTCCGG CGCAGTGTCG GAGGTCGACA TCCTGCGGCT CGAGCGCGAC
CTGAGCAAGT ACCGCGGCGA TGTCGAGCAG GCCGGCGCGC AGATCGCCCG GGTGTCGGCG
GCCGTCGGCG AGGCGCAGCG CAAGATCCAG GAGACCGAGA TCGCCTTTCG CAACGAGGCC
CGCAAGGAAC TGGCCGATGT GCTGGGCCGC ATGAACGCGC TGACAGAGGG GCGCGTCGCG
CTGAGCGACA AGGTCGACAA GGCCCAGGTC AAGTCGCCGG TGCGCGGCCG TGTGCAGCGT
CTGCTGGCCA ACACCGTCGG CGGCGTGGTG CAACCTGGCC GCGACATCGT CGAGGTCGTC
CCGCTCGACG ACGCGCTGGT GCTCGAAGCC CGGGTGTTCC CGCGCGACAT CGGCTTCATC
CACCCAGGCC AGCAGGCGAC GGTGAAGTTC ACGGCCTACG ACTTCTCGAT CTACGGCGGC
CTCGATGCGA CCGTCGAGAA CATCAGCCCC GACACCGTGA TCGACGAGAA GGGCAATGCC
TTCTACGTCG TGCGCGTGCG CACGCGCCTG GCTCAGCTGG GCGACAAGCT GCCGATCATT
CCCGGCATGA CGGCCGAGGT CGACATCCTG ACCGGCAAGA AGACGGTGAT GTCCTACCTG
CTCAAGCCGG TGCTGCGGGG CAAGGCCTAC GCGCTGTCGG AACGCTGA
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| Protein sequence | MGSPAPRLMG FGRALLAGLE RTRLWLEPLT KRVFGPVAPS AAVGSTGYEA EPEALLARAR
TQRAQVIVRA AVCVVAVLLV WAALARIDEV TRGDGKVIPS RQLQVIQSLD GGVVSEILVK
EGQVVEAGQL LLRIDETRAT SGVRENAAQS FALLARQARL RALAEGNPFQ PPPPSKDPEE
RRIIEEERRL YESRQSELST IVSISRQQLM QREQELNEAR SRRASAERGL DLSQQELAKT
RPLLASGAVS EVDILRLERD LSKYRGDVEQ AGAQIARVSA AVGEAQRKIQ ETEIAFRNEA
RKELADVLGR MNALTEGRVA LSDKVDKAQV KSPVRGRVQR LLANTVGGVV QPGRDIVEVV
PLDDALVLEA RVFPRDIGFI HPGQQATVKF TAYDFSIYGG LDATVENISP DTVIDEKGNA
FYVVRVRTRL AQLGDKLPII PGMTAEVDIL TGKKTVMSYL LKPVLRGKAY ALSER
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