| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1678 |
|---|
| Symbol | virB11 |
|---|
| ID | 4785763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 1804119 |
|---|
| End bp | 1805204 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640090251 |
|---|
| Product | type IV secretory pathway, VirB11 component |
|---|
| Protein accession | YP_001020875 |
|---|
| Protein GI | 124266871 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
|---|
| TIGRFAM ID | [TIGR02788] P-type DNA transfer ATPase VirB11 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.247964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC ACGCCTGCGA GCGCGAGGAT CTCGGCGAAG GCTGGTGCGG TGATGCCACG
TCGGTCGTCG AGTTCCTGCG CCCTCTGCGC GACCAACTCG ATGCGCCCGG CGTGCTGGAA
GTCTGCGTCA ACCGGCCCGG CGAACTGCTG GTCGAGACGG TGCGTGGCTG GCAGACCGTA
CCGGCGCCCG AGATGACGCA GGAGCGCTGC CTGTCGCTCG CCACCGCCGT CGCCACCTTC
TGCGACCAGC AGGTCAACCA GGAACGGCCA CTGCTGTCGG CCACGCTGCC CAGCGGCGAG
CGCATCCAGT TCGTCATCCC ACCGGCCGTG CCGCGGGGTA CGGTATCGAT CACGGTGCGC
AAGCCGTCGC ACCTGATCAA GCGGCTGGAC GATTTCGAGC GCGAGGGCCT GTTCGAGCGC
ACGGCCACCG TGACGCGCAC CCCGAACGCG GACCTGCTGC CCTTCGAGCG CGAACTGGTC
GAGCTGAAGG ACGCCGGCCG CTATGCCGAG TTCCTGCGGC TGGCCGTCCG CAAGCACCAG
ACCATCGTCG TCAGCGGCAA GACCGGCTCG GGCAAGACCA CCTTCATGAA GGGCCTGGTC
GAGGAAGTGC CGAAGCACGA GCGGCTGATC ACGATCCAGG ACACGGCCGA GCTGACCCTG
CCGAACCACC CGAACGTGGT GCACTTGTTC TACAGCAAGG ATGCCCAGGG CACGGCCCGC
GTGACTGCGA AGTCGCTGCT CGAAGCCTGC CTTCGTATGA AGCCCGACCG CATCTTCCTG
GCCGAAGTGC GGGGCGACGA GTGCTTCTAC TTCGTGCGTC TCGCGGCCTC GGGCCACCCG
GGCAGCATCA CTAGCGTGCA TGCAGGCAGC TGTGCGCTGG CCTTCGAGCA GATGTCGCTG
ATGATCCGCG AGACCGGCGC TGGCGGTGGC CTGCGCATGG ACGAGATCAA GTGGCTGCTC
AGCGTCGTCG TCGACGTGAT CGTGCAGTTC GATCGCGACG AGCACGGGCG CTTCATCTCC
GAGATCCTCT ACGAGCCCCG GCGCCAGCGG CTCGGGCGCT GGGATCAGCA GTCGGCGGCA
GCATGA
|
|---|
| Protein sequence | MNQHACERED LGEGWCGDAT SVVEFLRPLR DQLDAPGVLE VCVNRPGELL VETVRGWQTV
PAPEMTQERC LSLATAVATF CDQQVNQERP LLSATLPSGE RIQFVIPPAV PRGTVSITVR
KPSHLIKRLD DFEREGLFER TATVTRTPNA DLLPFERELV ELKDAGRYAE FLRLAVRKHQ
TIVVSGKTGS GKTTFMKGLV EEVPKHERLI TIQDTAELTL PNHPNVVHLF YSKDAQGTAR
VTAKSLLEAC LRMKPDRIFL AEVRGDECFY FVRLAASGHP GSITSVHAGS CALAFEQMSL
MIRETGAGGG LRMDEIKWLL SVVVDVIVQF DRDEHGRFIS EILYEPRRQR LGRWDQQSAA
A
|
|---|
| |