| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1677 |
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| Symbol | virD4 |
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| ID | 4785762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 1802893 |
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| End bp | 1804122 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640090250 |
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| Product | type IV secretory pathway, VirD4 component |
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| Protein accession | YP_001020874 |
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| Protein GI | 124266870 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.250508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCG TTGCAGCCCT TCCGTTCTCG GCCTGGCCCA CGGGCCGCAA GGTCGCGGCC
GGCGCCTTCG CCGTCATGGG CTACATCGCA CTGGCCTGCG CGGCGGTCTA CCTGGCCGGT
GTGCTGTTCT TGGTTCTGAA CAAGGCGAAC CCCAAGCAGG CGCAGTTCGC CAGCATCGTT
CACTACTGGG GCCTCTACGC CGACGATGCC CAGCTCCGCA AGAAGCTGCA ACTCGCGATC
GGCGTGTCGG GGATCGGCCT GTTGATCCTG CTGCCAGCCG GTCTGGTCGC CGCCGCACGT
CCGCGGCGGG CCCTGCATGG CGATGCCCGC TTCGCCAGCC CCGCCGAGGT TGATCGCGCG
GGCCTCACGG GCGGCGACGG GCAGCCGGGC ATCCTCATCG GCCGCCACCG GGGCAAGTTC
CTGTCGCTTC CTGGCCAGCT CTCAGTGATG CTGTCGGCGC CGACCCGCAG CGGCAAGGGC
GTGGGCGTCG TGATCCCGAA CCTGCTCAAC TGGCCCGACT CCGTCGTCGT GCTTGACATC
AAGGGCGAGA ACTACGACAT CACGGCCGGC TACCGCGCCG CACACGGGCA GGCGGTCTAC
GCCTTCTCGC CGTTTGACGA GGACGCGCGC AGCCAGCGTG ACGCCGACGA GTACAGCGCC
ATGCTCGGCC ACTTCACCGA GCGCGCCACC TCGCGCGGGC ACAGCCGATC CTTCAGCGGC
CACGGGCACA GCACCGTCAG CCGCAACGAG AGCGAGCAGC GCCGCGCGCT GCTGCTGCCG
CAGGAGTTCA AGGAGCTGGG CAGCGAGCGC CTGGTGGTGA TATTCGAGAA CTGCAAGCCG
ATCCTCGGCG AGAAGATCCG CTACTACCGC GACAAGGCCT TCACCTCGCG CCTGCGGCCG
GCACCGGCGG TGCCGCGCAT GAACATGGAC CTGCACCTGG CCCGCGTGCA GGAGCGCTGG
CGCTACGTGG ACGACGAGCT GGGCCCGGGC GATGGCTTGG ACTACGAGCA ACTGGCCTAC
GACATGAGCC GGCTGCCCGC ACTCGCCGAT GGCGAGCCCG GCCAGGTCGC CGAAGGCATC
CTCGACTTCA TGGTCGGCCC TCGGCCGGGC GGAGCCTCGA ACGGCGGCGC GATCGAAGCC
GTCGCCGACG AAGACGACGT CCTGCTCAGC GAAGACAGCA CCGTGGTCAT CGCCGATCCG
TCCGTCATCG AACGCGCCGA CATCACCTAG
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| Protein sequence | MSSVAALPFS AWPTGRKVAA GAFAVMGYIA LACAAVYLAG VLFLVLNKAN PKQAQFASIV
HYWGLYADDA QLRKKLQLAI GVSGIGLLIL LPAGLVAAAR PRRALHGDAR FASPAEVDRA
GLTGGDGQPG ILIGRHRGKF LSLPGQLSVM LSAPTRSGKG VGVVIPNLLN WPDSVVVLDI
KGENYDITAG YRAAHGQAVY AFSPFDEDAR SQRDADEYSA MLGHFTERAT SRGHSRSFSG
HGHSTVSRNE SEQRRALLLP QEFKELGSER LVVIFENCKP ILGEKIRYYR DKAFTSRLRP
APAVPRMNMD LHLARVQERW RYVDDELGPG DGLDYEQLAY DMSRLPALAD GEPGQVAEGI
LDFMVGPRPG GASNGGAIEA VADEDDVLLS EDSTVVIADP SVIERADIT
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