| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1626 |
|---|
| Symbol | |
|---|
| ID | 4787250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1754782 |
|---|
| End bp | 1756410 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640090194 |
|---|
| Product | putative cation efflux system transmembrane protein |
|---|
| Protein accession | YP_001020823 |
|---|
| Protein GI | 124266819 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.182447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC GACAGATCCT GTGGACGGTC GGCGCCGTTT CTGCGCTGGC CCTGGGCGGC
TATGCGCTCT ACCAGCTCGG CATGCAGCGC GGCATGGGGC ACTCGGCAAC AGGGCCGGCC
GACCCGGCGA GCCCGTCCCC AGCCGAAGAC CCGACGAGCA GCATCGCCGC TGGCGAAGCC
GCGACACGGC GCCACATCAA GGCCGGCATC AAGGCGGGCG ATGTCGATCC CGCCACCGGC
AAGCCGGTCC TTTACTACCA CGACCCGATG GTGCCGGGCA AACGCTTCGA CGCGCCGGCC
AAGTCGCCCT TCATGGACAT GATGCTGGTG CCGGTTTACG GCGGTGCCGG TGGCGAAGAC
CAGGGCACGG TCACCGTGAG TCCGCGCATC CAGCAGAACC TGGGTGTGCG CACGGCCGAG
GTCGTGGAGG GCACGTTGCA GCCCATGGTC AGCGCCGTCG GCAGCATCGC CTGGAACGAG
CGCGACCAGT CGGTGGTGCA GGCAAGGGCG ACGGGCTACA TCGAGAAGCT GCATGTGCGG
GCAACGCTCG ACCGCGTGCG CGCAGGCCAG CCCTTCGCCG ACATCTACGT GCCCGAGTGG
GTCGCAGCCC AGGAGGAGTA CCTCGCTGTC AAGCGTTTCG CGAAGGATGA TGCGGGGCTG
GCAGCAGCAG CACGCCAGCG CCTGCTGCTG GCCGGCATGA GCGAGGCGCA GGTCGTGCGC
GTCGATGCGG CGAGCACCGT GCAGCCGCGC ATCACGCTGG TAGCACCGTC GAGCGGCGTG
GTCGCCGAAC TGGTCGCCCG CGAGGGCATG ACGGTGAGTC CGGGGATGAT GCTGGCGCGC
ATCAACGGCC TGGCCGCTGT CTGGGCGAAT GCCGAGCTGC CCGAGAGCCA GGCCGCGCTC
GTGCGGCCCG GCAGCCAGGT CGAAGCGCGC AGCCCCGGCG TCCCGGGGGC GGTGTTCCGC
GGCACCGTCC AGGCGCTGCT GCCCGAGGTG AACGCGACCA CGCGCACCCT GAAGGCGCGC
GTGCAGTTCG CCAACCCCGA GGACCGGCTG GTGCCGGGCC TCTTCGTCAC GATGCAGTTC
ATGGACATGC GTGCCCAGAA GGCCATGCTG GTGCCGACCG AGGCCGTGAT CCAGACCGGC
CGGCGCGCGG TGGTGATGGT GGCTGAGGAG GGCGGGCGGT TTGCGCCGGT CGATGTGGAG
ACCGGTCTGG AAATCAGTGG CCAGACCGAA ATCAAACGCG GTCTGAAGGC AGGCCAGCGT
GTCGTCGTCT CGTCGCAGTT CCTGATCGAC TCCGAAGCCA GCCTGAAGGG TGTCGAGGCG
CGGCTGAACA ACCAGCCGGC GCCGACGGCA GCCAACACCG CCCAGCGCCA CAGCGCGCAG
GGGCTGATTG AGTCGCTGGA CCGGGAGAGC GTCACGCTCA GCCACGGCCC CATCCCGAGC
GTCGGCATGG GCGCGATGAC GATGGAGTTC AAGCTGCCGC CGCCCAATCG GCTGCCCCGT
GGCCTGGCGG TGGGTGACCG CGTCGATTTC GAGTTTTACG TCGACCCGAC CGATGGCCCG
ACGGTACTCA CGCTGACGTT GCTGCCGCCG GCAGCTCCCG CTGCCGCCGC GCCGGGAGCT
TCGCGATGA
|
|---|
| Protein sequence | MNTRQILWTV GAVSALALGG YALYQLGMQR GMGHSATGPA DPASPSPAED PTSSIAAGEA
ATRRHIKAGI KAGDVDPATG KPVLYYHDPM VPGKRFDAPA KSPFMDMMLV PVYGGAGGED
QGTVTVSPRI QQNLGVRTAE VVEGTLQPMV SAVGSIAWNE RDQSVVQARA TGYIEKLHVR
ATLDRVRAGQ PFADIYVPEW VAAQEEYLAV KRFAKDDAGL AAAARQRLLL AGMSEAQVVR
VDAASTVQPR ITLVAPSSGV VAELVAREGM TVSPGMMLAR INGLAAVWAN AELPESQAAL
VRPGSQVEAR SPGVPGAVFR GTVQALLPEV NATTRTLKAR VQFANPEDRL VPGLFVTMQF
MDMRAQKAML VPTEAVIQTG RRAVVMVAEE GGRFAPVDVE TGLEISGQTE IKRGLKAGQR
VVVSSQFLID SEASLKGVEA RLNNQPAPTA ANTAQRHSAQ GLIESLDRES VTLSHGPIPS
VGMGAMTMEF KLPPPNRLPR GLAVGDRVDF EFYVDPTDGP TVLTLTLLPP AAPAAAAPGA
SR
|
|---|
| |