| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1614 |
|---|
| Symbol | rimO |
|---|
| ID | 4787238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1742274 |
|---|
| End bp | 1743689 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640090182 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_001020811 |
|---|
| Protein GI | 124266807 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0719193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGA CTGCTGATGC GGCTTCGACC GCCCTGACCT CGGGCGACGC CGCCTCCCGC
AACATCCCCA AGATCGGCTT CGTCTCGCTC GGTTGCCCCA AGGCGCTGAC CGATTCGGAG
CTCATCCTCA CGCAACTGCG TGCCGAGGGT TACGACACCT CGAAGAGCTT CGCTGGTGCC
GACCTGGTGA TCGTCAACAC CTGCGGCTTC ATCGACGACG CGGTGAAGGA GAGCCTCGAC
ACCATCGGCG AGGCGCTGGC CGAGAACGGC CGGGTCATCG TCACCGGCTG CCTGGGCGCG
AAGGCGGGCG AGGGCGGCGG CAACCTAGTG CGCCAGATGC ACCCGAGCGT GCTGGCGGTG
ACCGGGCCGC ACGCGACGCA GGAGGTCATG GACGCCGTGC ACGTGCACGT GCCGAAGCCG
CACGATCCCT TCGTCGACCT GGTACCGGCC TACGGCGTGA AGCTCACGCC CAGGCACTAC
GCCTACCTGA AGATCAGCGA AGGCTGCAAT CATCGCTGCA GCTTCTGCAT CATCCCCAGC
ATGCGCGGCG ACCTGGTGTC GCGGCCGATC GGCGACGTGC TGAACGAGGC ACGTGCGCTG
TTCGAGTCGG GCGTGAAGGA ACTGTTGGTG ATCAGCCAGG ACACCTCGGC CTACGGCGTC
GACGTGAAGT ACCGCACCGG CTTCTGGGAC GGCAAGCCGG TGAAGACGCG CATGACCGAC
CTGGTGGAGC GCCTCGGCGA GCTGGCCGAG CCCTTCGGCG CGTGGGTGCG GCTGCACTAC
GTCTATCCCT ATCCGCACGT CGACGAGATC CTGCCGATGA TGGCCGGCGG CCGGGTGCTG
CCCTACCTGG ACGTGCCGTT CCAGCATGCG CACCCCGACG TGCTCAAGCG CATGAAGCGG
CCCGCCAACG GCGAGAAGAA CCTCGAGCGC CTGCAGCGCT GGCGCGAGGC TTGCCCGCAG
ATCGTGGTGC GCTCGACCTT CATCGCCGGC TTCCCCGGCG AGACCGAGGC CGAGTTCGAG
CACCTGCTCG ACTTCATGCG AGAGGCCCGC ATCGACCGGG CCGGCTGCTT TGCCTACTCG
CCGGTCGAAG GCGCGAGCGC GAACGCGCTG GCCGGCGCCT TGCCCGAGGC CGTGCGCGAG
GAACGCCGGG CGCGCTTCAT GGCGGTCGCC GAGGCGGTGT CGGCCGAGAA GCTGCGCGAG
CGCGTCGGCG CCGAGATGCA GGTGCTGATC GATGCTGCAC CGGCGCTCGG CAAGAAGGGC
GGCCGAGGCC GCAGTTACGC CGACGCGCCC GAGATCGACG GCGTGGTGCA CCTGCTGCCG
CCGCAGAAGG CCTCGAAGCA GTTGCGCGTA GGCGAGTTCA CGCGCGCCCG CATCGTCGGC
ACCCAGGGCC ACGACCTGGT GGGCCAACCG CTGTGA
|
|---|
| Protein sequence | MTQTADAAST ALTSGDAASR NIPKIGFVSL GCPKALTDSE LILTQLRAEG YDTSKSFAGA
DLVIVNTCGF IDDAVKESLD TIGEALAENG RVIVTGCLGA KAGEGGGNLV RQMHPSVLAV
TGPHATQEVM DAVHVHVPKP HDPFVDLVPA YGVKLTPRHY AYLKISEGCN HRCSFCIIPS
MRGDLVSRPI GDVLNEARAL FESGVKELLV ISQDTSAYGV DVKYRTGFWD GKPVKTRMTD
LVERLGELAE PFGAWVRLHY VYPYPHVDEI LPMMAGGRVL PYLDVPFQHA HPDVLKRMKR
PANGEKNLER LQRWREACPQ IVVRSTFIAG FPGETEAEFE HLLDFMREAR IDRAGCFAYS
PVEGASANAL AGALPEAVRE ERRARFMAVA EAVSAEKLRE RVGAEMQVLI DAAPALGKKG
GRGRSYADAP EIDGVVHLLP PQKASKQLRV GEFTRARIVG TQGHDLVGQP L
|
|---|
| |