| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1571 |
|---|
| Symbol | |
|---|
| ID | 4785621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1696711 |
|---|
| End bp | 1697199 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640090139 |
|---|
| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_001020768 |
|---|
| Protein GI | 124266764 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.421944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCG TTCCGTTCCG CATCGGCGAG GGCTGGGACA CGCATGCGCT GGTCACCGGC
CGCAAGCTCG TCCTCGGTGG CGTCGACATT CCGCACAGCC ACGGTCTGCT CGGTCACTCC
GATGCCGACG CGCTGCTGCA CGCGATCACC GACGCGCTGC TCGGGGCCGC GGCGCTGGGC
GACATCGGCC GCCACTTCCC CGACACCGAC GCGCGCTTCG CCGGCGCCGA CTCGGGCGTG
CTGCTGGCCG AAGCGGCGAA GCGGGTGCGC GAGGCGGGCT GGGTAGTGGG CAACGTCGAC
GCCACCATCG TCGCGCAGGC GCCGAAGATG GCGCCGCACA TCCCGGCGAT GGTCGAGCGC
ATCGCCGCCT GCCTGGGCGT GGCGGCGTCG CAGGTCAACG TGAAGGCGAA GACGGCCGAG
AAGATGGGAC CGGTGGGCCG CGGCGAGGCC ATCGAGGCGC GCGCCGTGTG CCTGCTGCTG
CCGGCCTGA
|
|---|
| Protein sequence | MNPVPFRIGE GWDTHALVTG RKLVLGGVDI PHSHGLLGHS DADALLHAIT DALLGAAALG
DIGRHFPDTD ARFAGADSGV LLAEAAKRVR EAGWVVGNVD ATIVAQAPKM APHIPAMVER
IAACLGVAAS QVNVKAKTAE KMGPVGRGEA IEARAVCLLL PA
|
|---|
| |