| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1256 |
|---|
| Symbol | rumA |
|---|
| ID | 4785833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1353409 |
|---|
| End bp | 1354773 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640089822 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_001020453 |
|---|
| Protein GI | 124266449 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.193423 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAG GCGATGAATG GTTGACGGTC GAGTCGCTCG ACCTCGAGGC ACAAGGCGTG
GCGCACAACG CCGAAGGCAA GGTGGTGTTT GTCGAGGGCG CCTTGCCGGG TGAGCAGGTT
CTGGTGGCCG TGGGACGGCG CAAGAACAAC TGGGAGCAGG GCACGATGAC GGCGCTGCGC
CGCGAGAGCT CGCAACGCGT CACGCCGCGT TGCGAGTACT TCGGACTCTG CGGCGGCTGC
AAGATGCAGC ATTTCCATGT CGGTGCTCAG GTCGCGGTGA AGCAGCGGGT GCTGGAGGAC
AACCTCTGGC ATCTGGGCAA GGTGAAGGCC GGCCAGATGC TGCGGCCCAT CGAGGGGCCG
ACCTGGGGCT ATCGCTACCG GGCGCGCCTG TCGGTGCGGC ATGTCGTCAA GAAGGGCAAG
GTCCTGATCG GCTTCCACGA GCGCAAGTCG AGCTACGTGG CGGACATGAG CCGCTGCGAG
ATCCTGCCGC CGCACCTGAG TGCGATGCTG CTGCCACTGC GCGCCCTGAT TGCCGCCATG
GACGGCCGCG ACCGGCTGCC GCAGATCGAG GTGGCGATCG GCGAGGCGCC CGACGGGCTC
GTGACGGCGC TGGTGCTGCG CCACCTCGAG CCCCTGAGCG CAGACGACCT GCAGAGGTTG
CGGGCTTTTG GCGCCGAGCA CGGCGTGCAG TGGTGGCTGC AGCCCAAGGG GCCCGACACC
GTGCAGCGGC TCGACGACGG CGGACCTCAG CTCGCCTACA CGTTGCCGGA ATACGGCGTC
GTCATGCCCT TCAAGCCGAC CGATTTCACC CAGGTCAACC ACGCCATCAA CCGCGCGCTG
GTGGTGCGGG CGCTGCGGCT GCTGGCCGTG CAGGGCGACG AGCGCGTGAT CGACTGGTTC
TGCGGGCTCG GCAATTTCAC GCTGCCGCTG GCCACGCAGG CGCGAGAGGT GCTCGGGATC
GAGGGCAGCG AAGCATTGGT GGCGCGCTCA CGGGACAACG CGGCGCTCAA CGGCCTGTCG
CACAAGACGC GCTTCGACGC GCGCAACCTG TTCGAACTGC TGCCGGCGGA TCTGGTGGCC
TACGGCAGCG CGACAAAGTG GCTGGTCGAC CCGCCGCGCG AGGGCGCATT CGCCCTGGCC
AAGGCCGTGG CCGATGCGGT GCAGGACCCG GGGCAGGCGC CCGGCTGGGT GCCACCGGCG
CGCATCGTGT ACGTGAGCTG CAATCCGGCC ACGCTGGCGC GCGACGCCGG CCTGCTGGTG
CACCAGGCCG GCTACCGCTG CGTGCAGGCT GGCGCAGTGA ACATGTTCCC GCACACCGCG
CATGTGGAAA GCATTGCGGT CTTCGACCGC AATGCTTCGG CTTAG
|
|---|
| Protein sequence | MTAGDEWLTV ESLDLEAQGV AHNAEGKVVF VEGALPGEQV LVAVGRRKNN WEQGTMTALR
RESSQRVTPR CEYFGLCGGC KMQHFHVGAQ VAVKQRVLED NLWHLGKVKA GQMLRPIEGP
TWGYRYRARL SVRHVVKKGK VLIGFHERKS SYVADMSRCE ILPPHLSAML LPLRALIAAM
DGRDRLPQIE VAIGEAPDGL VTALVLRHLE PLSADDLQRL RAFGAEHGVQ WWLQPKGPDT
VQRLDDGGPQ LAYTLPEYGV VMPFKPTDFT QVNHAINRAL VVRALRLLAV QGDERVIDWF
CGLGNFTLPL ATQAREVLGI EGSEALVARS RDNAALNGLS HKTRFDARNL FELLPADLVA
YGSATKWLVD PPREGAFALA KAVADAVQDP GQAPGWVPPA RIVYVSCNPA TLARDAGLLV
HQAGYRCVQA GAVNMFPHTA HVESIAVFDR NASA
|
|---|
| |