| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0866 |
|---|
| Symbol | |
|---|
| ID | 4787159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 900726 |
|---|
| End bp | 902825 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640089427 |
|---|
| Product | putative membrane transport protein |
|---|
| Protein accession | YP_001020063 |
|---|
| Protein GI | 124266059 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.201818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTGATC CGGCCCGCGG CTTCGAGCGC CGGCTGCACC GCATCTACGG TCTGTTCGCG
CTGGGCGTGC TGGCCTTCGT CGCGCTGGTC GGCATGGTCG ATCGCGGCGG CGGCCGGCAC
GGCTGGGTGG GCGCCACCTT CCTGATCGCG ACGATCGGCG TCTATGCCGT CATCGGCCTG
CTGTGCCGCA CCACCGACGA GACCGAGTAC TTCGTCGCCG GCCGGCGCGT GCCGGCGATG
TACAACGGCA TGGCCACCGC GGCCGACTGG ATGTCGGCCG CCTCCTTCAT CGGAACCGCC
GGCGTGCTCT ACCTGCAGGG CTTCGCCGGC CTCGCCTACA TCCTGGGCTG GACCGGCGGC
TACTGCCTGG TCGCGGTGCT GCTGGCCCCC TACCTGCGCC GTTTCGGGCA GTTCACCATC
CCCGATTTCC TCGGCGCCCG CTACGGCGGC TCGCTGCCGC GCCTGGTCGG CGCGGCAGCG
GCGGTGCTGG TGTCCTTCGT CTACCTGGTG GTGCAGATCT ACGGCGTGGG CCTGGTCACC
TCGCACCTGG CCGGCTTCAG CTTCGAGATC GGCGTGTTCG TCGGCCTCGG GGGCGTGCTG
GTGTGCTCCT TCCTCGGCGG CATGCGGGCG GTCACCTGGA CCCAGGTCGC GCAGTACATC
GTGCTGATCG TGGCCTACCT GGTGCCGACG GTGTGGCTGT CGGTCAAGCA GACCGGCAAC
CCGGTCGCGC CGTTCGCCTA CGGGGCGCAG TTGCAGCAGG TGAGCGAGCG CGAGCGCCAG
CTCGTCGCCG ACCCGCGCGA GCGCGAGGTG ATGGCGCGCT ATGCGCAGCG CGCCGCCCAG
GCCGACGCCA AGCTCGGCAA TGTGCGGGCC AGCATGGAAG AAGACGACCG CCAGCTGTCG
GCGCAGATCG CGCAGTTGCG CGCCGAGGCC GCGCCGCTGG CCCAGATCCA GCAGCTGCGG
CGGATGCAGG CCACGCTGCC GCGCAACGAG GAAGACGCTC GCGAGAGCTA TGTGAAGGCA
CGCGACGAGG CCGCTGCCCG GGCCCGGCCG CTGGGCGGGC TGCCGCCGCA TGCCGGGCCG
GTGCGCACCG TGGCCGACGG CACGGATGCG CCGCCCGGCA GCGCCGATGC GACGGAGAGC
TCGGCCCGGC GCAACTTCCT CGCGCTGGTG CTGTGCCTGA TGGTCGGCAC CGCCGCGATG
CCGCACGTGC TGATGCGCTG CTACACCACG CCGTCGGTGC GCGCCGCGCG GCGCTCGGTG
GGCTGGGCGC TGTTCTTCAT CCTGCTGCTC TACCTGATGG CACCCGCGCT CGCGGTGTTC
GTGAAGCACG AGGTGCTGAC GCACGTGGTG GGCCTTCGGT TCAGCGAGCT GCCGGGCTGG
CTGCTGCGCT GGTCGCGGTT GAGCGGCTCG CTGGTGTCCG TGGAGGACGT CAACGGCGAC
GGACTGCTGC AGTTCGGCGA GCTCAAGTTG AGCAGCGACA TGATCGTGCT GGCCGCCCCG
GAGATCGGCG GGCTGCCGAG CGTCGTGACC TACCTCGTCG CGGCCGGCGG CCTGGCCGCG
GCGCTGTCCA CCGCCGATGG CCTGCTGCTC ACGATCTCCA ACTCGCTGTC GCGCGACGTG
TACTACCAGT CGGTCAACCC GCAGATCAGC CCGGCGCGCC GCGTGCTGAT GGCGAAGATG
GTGGTGCTGC TGGTCGCGCT GCTGGCGGCC TATGTCGCGT CGCTGCACAT CGCCCAGGTG
GTGCCACTGG TCGCGGCGGC GTTCTCGCTG GCGGCCGCGG CCTTCTTCCC GGCGCTGGCG
CTGGGCATCT TCTGGCCGCG CGCCAACGGC ATCGGCGCCT CGTCCGGCAT GCTGGCCGGC
CTGGGCCTGT GCGTCTACTA CATGGCGGTC AACTTCGAGA TGGGGCGCGC GCTGTTCGGG
CTGGGCCCGC CCTCGGTCGC GACCCGCTGG TTCGACATCC ATCCGGTCGC GGCGGCCGTG
TTCGCGGTGC CGTTCGGGCT GGCGGTGGCG GTGGTCGTGA GCCTGCTGAC GAAACCGCCC
GACGCCGAGC GGATGCGCTG GCTCAGGAAC CTGCACACGC CCCAGCCCGG CGAGCGCTGA
|
|---|
| Protein sequence | MADPARGFER RLHRIYGLFA LGVLAFVALV GMVDRGGGRH GWVGATFLIA TIGVYAVIGL
LCRTTDETEY FVAGRRVPAM YNGMATAADW MSAASFIGTA GVLYLQGFAG LAYILGWTGG
YCLVAVLLAP YLRRFGQFTI PDFLGARYGG SLPRLVGAAA AVLVSFVYLV VQIYGVGLVT
SHLAGFSFEI GVFVGLGGVL VCSFLGGMRA VTWTQVAQYI VLIVAYLVPT VWLSVKQTGN
PVAPFAYGAQ LQQVSERERQ LVADPREREV MARYAQRAAQ ADAKLGNVRA SMEEDDRQLS
AQIAQLRAEA APLAQIQQLR RMQATLPRNE EDARESYVKA RDEAAARARP LGGLPPHAGP
VRTVADGTDA PPGSADATES SARRNFLALV LCLMVGTAAM PHVLMRCYTT PSVRAARRSV
GWALFFILLL YLMAPALAVF VKHEVLTHVV GLRFSELPGW LLRWSRLSGS LVSVEDVNGD
GLLQFGELKL SSDMIVLAAP EIGGLPSVVT YLVAAGGLAA ALSTADGLLL TISNSLSRDV
YYQSVNPQIS PARRVLMAKM VVLLVALLAA YVASLHIAQV VPLVAAAFSL AAAAFFPALA
LGIFWPRANG IGASSGMLAG LGLCVYYMAV NFEMGRALFG LGPPSVATRW FDIHPVAAAV
FAVPFGLAVA VVVSLLTKPP DAERMRWLRN LHTPQPGER
|
|---|
| |