Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A0661 |
Symbol | |
ID | 4784788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | + |
Start bp | 695493 |
End bp | 698513 |
Gene Length | 3021 bp |
Protein Length | 1006 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640089220 |
Product | signal transduction protein |
Protein accession | YP_001019858 |
Protein GI | 124265854 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAACG ACCCGATGGC CAGCGGCGGT TTTCCACCGA CCCCGCGCGC GCAGCCCGAG CGGCCCGAGC GGTCGCTGGC GGCCTCGCTC GCGCTGCTCG CCGTCCTGCA CTTCGTGTTC GCCTACGGCG CGATCCACCT GTCCCGTCAG CCGGGCAGCG TCGCCACGCT CTGGTATGCC AATGCGGTGG TCGCGGTCGT GCTGCTGTCG CGCCGGCGCG CCGAATGGCC GCTGCACCTG CTGGCGATGG CCGTGGCCAA TGTCGCCGCC AACCTGTTCA GCGGGCACGC GCCCGGTCTG AGCCTGTCTT TCCTGCTGCC CAATCTGCTG GAGGCCTCGC TCGCGGCTGC ACTGCTGCGT CTGGCCGGAC CGCCCGCGCG CTGTGTCCAA CAGGTCGGAG CGCTGCTGTG GGCGCTGGTG CTGGGGGCCG TCGTGCCGAG TCTCGTCGGC GCCACGATGG GAGCGGCGGT GCTGTCGATG CAGTTCGACG CGCCCGTGGG CTCGCTGTGG TCGGCCTGGT TCGTCGGCAC GGTCATCGGT GGCGTGTCGG TGCTGCCGCT GGGCCTGCTG CTGCTGGCGC GTGGCGGTCG GGCGGTGTGG GCGGCGCTGG CCCGGCCCGC GGTGGCCGCG GTGGTGCTGG TCGCGGTCGC GACCGCGGCC TCGGCCTCGG TGTTCTCGCA TTTCCGCTAC GTCTACGTGT CCGTCGCGCT GATGCTGGTG GCGGCCGTCG GGGGCTTCGC CGGCGCAGCC ACCGGCGGCC TGCTCGCCTC GCTGTCGGTC GGCATCGTCA TCGCGCTCGG CCTGTTCCAA CCCGGGCCGG GCGAGGGCTG GCTGGAGACG GTGGCCTTCT ACCTGCCGGT GGTGCTGACG CTGGTGCCGC CGCTGCTGCT GGCCGCTGCG ATGGAGCGCA ACCGCCAGCA TGTCCACGAG ATCGAGGACC GCGAGGCGCA GTTCCGCACG CTGTACGAAC GCACGCCGGT GATGATGCAC TCGGTCGACG TCGAGCGCCG GCTGGTCGCG GTCAACGACG CCTGGCTGGC CCGCCTGGGC TACGAGCGCT CCGAGGTCCT CGGGCGCCGT TCCACCGAGT TCCTGACCGC CGAGTCTCGC GAGCGCGCGG AGCGGTCGAT CATTCCACGC TTCATGCGCG AAGGCGAACT GCGCGACATG GACTACCAGA TGGTGACCAG GTCCGGCGAG GTGCTCGACG TGCAGATCTC CGCCATCTGG GAGACCGACG CGCACGGGCA GCCTTTGCGC ACGCTCGCCG TTCTGAAGGA CGTGACCGAG CAGAAGCGTC TGGCGCTCGA GCTGGCGGCC GAGAAGGAGC GCATCGAGGT CACGCTGCAC TCGATCGGCG ACGGCGTGAT CAGCACCGAC GAAGCGGGGC GCATCACCTA TCTCAATCCG GTGGCAGAGC AGATGGTCGG TTGCCTGCTC GCGCAGGCCC GGGGCCTGCC GTTCGCGCAG GTCGTCCAGC TGTTCGACCA GGAGAGCGGC GCGCCGCTGC CGAGCCCGGT CGAGCAGTGC CTGCAGGACC GCGAGGTCTA TGGCGTGCGG GAAAGCGCGG CGCTGCGGCA CCGCTCCGGC CGCGACTACG GCGTGCAGAT CTCGGCCGCA CCGATCGCGG GGCGTGATGG ACGGGTGCTC GGCGCGGTGA TGGTGTTCCA GGACGTGACC GAGGCCCGCG GCCTGGCGCA GAAGATGTCC TACCTGGCCC ATCACGACGG CCTCACCGGC CTGCCCAACC GCGTGCTGTT CCAGGACCGC GTGCACCAGG CCTGCCAGTC CGGACGCCGG CATGGCCGGC GTTTCGCGGT GATCTTCATG GACCTGGACC ACTTCAAGCA CGTCAACGAT TCGCTGGGCC ATGCGGTCGG CGACGAGCTG CTGAAGGCGG TGGCACAGCG GCTCACCGGC GCGCTGCGCG CCAGCGACAC CATCTGCCGT CTCGGCGGCG ACGAATTCGT GGTGCTGCTG TCCGACCTCG ACGACGTCGA GGTCGATGGC GTGGCCGAGG TCGCCAAGAA GATCCTGCGG CAGGTGGCCC AGCCGTGCGT GCTGGGTGGC ACCGAGGTCA ACGTCGGCGC AAGCCTCGGC ATCGCGCTGT TCCCGGGCGA TGGCGAAGAC CCCGACACAC TGATGAAGCG TGCGGATGCG GCCATGTACC GGTCCAAGCG CGAAGGCCGC AACCGCTATC ACTTCTTCTC GAAGGCGGTC GACGATGCCG CCTCGGCGCG GCTGCAGCTC GAGGCGGACA TGCGCCGCGC GCTCGCGGCG GGCCAGTTCA TCGTGCACTA CCAGCCGGTG GTCCATGGCC GCACGCGCGA TGCGGTCGCC GTCGAGGCCC TGTTGCGCTG GGATCGTGCG GGCCAGGGCC TGCAGAGCCC GGCCGTCTTC ATCCCGGTGG CCGAGGAGAG CGGCCTGATC GTGCCGATGG GCCACTGGGT CCTGCGCCAG GCCTGCGAGC AGCTGCGGGC GTGGTCGGGC ACCGCGCTCG GCGGCATCTC GGTCGCGGTC AACGTCTCGC CGGTGCAGCT GGCGCAGGCA GATTTCGTCG ACACCGTGGC CGACGTGCTG CACGCCACCG GCGTCGACGG CAGCCGTCTC GAGTTCGAGA TCACCGAGTC CACGCTGATG CAGGACCCCG AGGCCACGCT GGAGATGCTG CGCCGCCTCA AGGGCCTGGG GGTGCGGATC GCGATCGACG ACTTCGGCAC CGGCTATTCC AGCCTCGGCC ACCTCAAGCG CTTTCCGGTC GACACGCTGA AGATCGACCA CACCTTCGTG CGCGACCTCG AGGCCGATGC CGATGACCGC GAACTCGTCC GCGCGATCCT CGCCATGGCC CGCAGCCTGC GGCTGCACGT CGTGGCCGAG GGCGTCGAGA CCGAGGCCCA GGCCGCGATC CTGGCCGCGA TGGAGTGTCC GGCTTTCCAG GGCTACCTGT TCGCCCGGCC CGCCGGCGCC GCCGTGACGG CGGCGTGGCT GCAGGACCGG GCCGCGACGC TCGCGCGGTG A
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Protein sequence | MTNDPMASGG FPPTPRAQPE RPERSLAASL ALLAVLHFVF AYGAIHLSRQ PGSVATLWYA NAVVAVVLLS RRRAEWPLHL LAMAVANVAA NLFSGHAPGL SLSFLLPNLL EASLAAALLR LAGPPARCVQ QVGALLWALV LGAVVPSLVG ATMGAAVLSM QFDAPVGSLW SAWFVGTVIG GVSVLPLGLL LLARGGRAVW AALARPAVAA VVLVAVATAA SASVFSHFRY VYVSVALMLV AAVGGFAGAA TGGLLASLSV GIVIALGLFQ PGPGEGWLET VAFYLPVVLT LVPPLLLAAA MERNRQHVHE IEDREAQFRT LYERTPVMMH SVDVERRLVA VNDAWLARLG YERSEVLGRR STEFLTAESR ERAERSIIPR FMREGELRDM DYQMVTRSGE VLDVQISAIW ETDAHGQPLR TLAVLKDVTE QKRLALELAA EKERIEVTLH SIGDGVISTD EAGRITYLNP VAEQMVGCLL AQARGLPFAQ VVQLFDQESG APLPSPVEQC LQDREVYGVR ESAALRHRSG RDYGVQISAA PIAGRDGRVL GAVMVFQDVT EARGLAQKMS YLAHHDGLTG LPNRVLFQDR VHQACQSGRR HGRRFAVIFM DLDHFKHVND SLGHAVGDEL LKAVAQRLTG ALRASDTICR LGGDEFVVLL SDLDDVEVDG VAEVAKKILR QVAQPCVLGG TEVNVGASLG IALFPGDGED PDTLMKRADA AMYRSKREGR NRYHFFSKAV DDAASARLQL EADMRRALAA GQFIVHYQPV VHGRTRDAVA VEALLRWDRA GQGLQSPAVF IPVAEESGLI VPMGHWVLRQ ACEQLRAWSG TALGGISVAV NVSPVQLAQA DFVDTVADVL HATGVDGSRL EFEITESTLM QDPEATLEML RRLKGLGVRI AIDDFGTGYS SLGHLKRFPV DTLKIDHTFV RDLEADADDR ELVRAILAMA RSLRLHVVAE GVETEAQAAI LAAMECPAFQ GYLFARPAGA AVTAAWLQDR AATLAR
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