| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0413 |
|---|
| Symbol | |
|---|
| ID | 4785166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 446478 |
|---|
| End bp | 447314 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640088971 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001019610 |
|---|
| Protein GI | 124265606 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0685563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA CCCTGCGCGA CAAGACCCTG TTCATCACCG GCGCCAGCCG CGGCATCGGC
CTGGCGATCG CGAAGCGCGC CGCGGCCGAC GGTGCGCGCA TCGCGATCGT GGCCAAGACC
ACCGAGGCCA ACCCCAAGCT GCCGGGCACC ATCTACAGCG CGGCGGCGGA AATCGAGGCC
GCGGGCGGCC AGGCACTGGC GATCGCCGGC GACATCCGTG ACGAGGCCAG CGTGCTGGCC
GCGGTGGCGC AGACCGTCGA GCGCTTCGGC GGCATCGACA TCCTGGTCAA CAACGCCAGC
GCGATCAGCC TCACGCCGAC GCCGATGACG CCGATGAAGC GCTTCGACCT GATGTTCGGC
GTCAACGTGC GCGGCACCTA CCTGTGCACC CAGGCCTGCC TGCCGGAGCT GCTAAAGAGC
GCCGCGGCCG GCCGCAACCC GCACGTGCTG AACATGAGCC CCCCGCTGTC GATGAAGCCT
CACTGGTTCA AGAACCACGT GGCATACACG ATGGCGAAGT ACGGCATGAG CGAATGCACG
CTGGGTCACG CAGCCGAGTT CAGGAGCCAT GGCATCGCCG TCAACAGCCT GTGGCCGCGC
ACTGCCATCG CCACCGCGGC GCTGCAGATG ATCCCCGGCA TCGACATCGC CCGCTGCCGC
ACGCCGGAGA TCCTGGCCGA CGCCGCCTGG CTGGTGCTGA CCCGCGACGC GAAGACGGTG
ACCGGCAACT TCTTCATCGA CGACACGCTG CTCGCGCAGC ACGGCATCAC CGACCTGGAG
AAGTACAGCG TCACGCCCGG CACGAAGGAC TTCGTGCTGG ACTTCTTCGT CGACTGA
|
|---|
| Protein sequence | MTTTLRDKTL FITGASRGIG LAIAKRAAAD GARIAIVAKT TEANPKLPGT IYSAAAEIEA
AGGQALAIAG DIRDEASVLA AVAQTVERFG GIDILVNNAS AISLTPTPMT PMKRFDLMFG
VNVRGTYLCT QACLPELLKS AAAGRNPHVL NMSPPLSMKP HWFKNHVAYT MAKYGMSECT
LGHAAEFRSH GIAVNSLWPR TAIATAALQM IPGIDIARCR TPEILADAAW LVLTRDAKTV
TGNFFIDDTL LAQHGITDLE KYSVTPGTKD FVLDFFVD
|
|---|
| |