| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0396 |
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| Symbol | |
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| ID | 4785912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 429555 |
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| End bp | 431549 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640088951 |
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| Product | sigma-54 dependent transcriptional activator |
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| Protein accession | YP_001019593 |
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| Protein GI | 124265589 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCGA ACGCCAGCCC CTACCTCGGC TTCGACAAGG ACGCCCGCGG GGTCAAGAGC
CTGTGGGAGC GCTTCAACGC CGGGCTGATC GACACCGAGG AGCGCCGCGA CACCTACCAG
CAGCTCCTGC TGCACGAATG GCAGCGCTGC AAGGCGCTGG GCGTCGATGT CGCCATGACC
ATGGGCCGCC GCCTGAGCGA CAGCGAATTC CGCCTGCGCA TGCAGGCGGA ACAGCTGCTG
CTCGAAACCG CGGTGCCGAT CGTGAGGGAC GTCGACCGCT TCCTCGCCGA CGTGCCGGGG
ATCATGATCC TGATCGACCG CTCCGGCTGC GCGCTGCACA TCAGCGGCGA CCCGCGTGTC
GGCGAGTTCG CAGCCAGCCG CACCGGCATC GTCGTGGGCT CGCAATGGGA CGAGGCCACG
GCAGGCACCA ACGGCATCGG CACGGCACTC GCGAAGCGGC AGCCGGTGCA CGTGTTCGCC
TCCGAGCACT TCTGCGAGGG CTGGCAGTCG TGGTCGTGCT GCGCCGCGCC CATCTTCGAC
GCCGACGGCC ACACCGTGCT CGGCGTCATC GACTACACGA CCATGGCGTC GGATTTCCGC
GAACAGGCGC TCGCACTCAC GGTCTCGGTC GCGAACTCCA TCCAGGCGCG CATGACCATG
CACCGCGAGC TCGAGCGCAG CCGCCTGGTC ACCGCCTTCA GCGAGGCGGC TCGCCGTTAC
CCCTTCGACG ACATGCTGGC GCTGGACCAT GCCGGGCGCC TGGCCATCCA CACGCCCAGC
GACCGCTGCC GGCGCATCGC CGAGAACTGG GCCTCGGGCG GCTTCGAGGG CACCCCCGCC
GTGCGCGAAA CCTTCGAGGT GACGGCTCCC AACTCCGAAT CGCGCATCGG CACCCTCATC
CTGCTGGCCA AGCCCGCCAG CTACGACCGC GTGTTCCTGC CGTCGAACAC GCCGTCCTCG
TTGCGCGACG CGGTGGAGCC GGTCAAGCGC TTCGGCCACT TCCTCACCCG CGACCCGGAC
ACCCGGCGCA TGCTGGCCGA GCTGGAGCGC GTGGCGGCGG CCGACGTGAA CGTGCTGATC
ATCGGCGAGA CCGGCACCGG CAAGGAGCTG CTCGCGCGCC AGTTGCACGC CAGCAGCCCG
CGCCGCGCCG AGCCCTACAT CGCGGTGAAC TGCGGCGCGA TCAGCGAAGA CCTGATGGAG
AGCACCTTCT TCGGCTACGT GAGGGGCGCG TTCTCCGGCG CCGACCCGCG CGGCCGGGCC
GGCTACTTCG AGTCCGCCAA GGGCGGCACG CTGTTCCTCG ACGAAGTGGG CGAGCTGCCG
CTGGCCATGC AGGCCGCGAT GCTGCGCGTG CTCGAGGACG GCAGCTACCA GCGCGTGGGC
TCCTGCGAAA CCCAGCAGGC GCGCTGCCGC ATCATCGCCG CGACGCACCG CAACCTGGAG
CAGCTGGTCG CGCAGGGCCG GTTCCGCCAA GACCTGTACT TCCGACTGAA GATCGTCCAG
AAGTCCATCA AGCCGCTGCG CGAGCGGCCC TGCGACCTGA CGCTGCTGAT CGACCAGTTC
GGCGACGCCA TGCGCCAGAA GCACGGCCTG CCCACGGTGC AGCTCCCGCC GGACACCCGC
GCCGCGCTCG AACGCTACCG CTGGCCGGGC AATGCGCGCG AGGTGCGCAA CGTGATCGAG
GCCGCCGTGC TGTGCGCCGA TGGCGCGATC GGCCTCGAAT GCCTGCCGCC CGAAGTGACC
CGTCCACCCG AGACCAGCAC CGAACCGGTG GTGGCCGGCA CGGCCGGCGA AGGTCTGGCC
GCCGTGCGCG ACTACGAGCG CCAGCTGATC CTGGGCCTGC TGCGCAAGTA CCGCAAGGTC
AACCACGTGG CCAGCGCGCT GGGCATTGCG CGCTCCACGC TGTACCGCAA GTTCGCGGAA
CTCGCCATCG ACCAGAGCGA GTTCACCCAG GCGGGCCACG ACGAGCGGCC GATCGCGCGC
GACGGCATCC ACTGA
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| Protein sequence | MKPNASPYLG FDKDARGVKS LWERFNAGLI DTEERRDTYQ QLLLHEWQRC KALGVDVAMT
MGRRLSDSEF RLRMQAEQLL LETAVPIVRD VDRFLADVPG IMILIDRSGC ALHISGDPRV
GEFAASRTGI VVGSQWDEAT AGTNGIGTAL AKRQPVHVFA SEHFCEGWQS WSCCAAPIFD
ADGHTVLGVI DYTTMASDFR EQALALTVSV ANSIQARMTM HRELERSRLV TAFSEAARRY
PFDDMLALDH AGRLAIHTPS DRCRRIAENW ASGGFEGTPA VRETFEVTAP NSESRIGTLI
LLAKPASYDR VFLPSNTPSS LRDAVEPVKR FGHFLTRDPD TRRMLAELER VAAADVNVLI
IGETGTGKEL LARQLHASSP RRAEPYIAVN CGAISEDLME STFFGYVRGA FSGADPRGRA
GYFESAKGGT LFLDEVGELP LAMQAAMLRV LEDGSYQRVG SCETQQARCR IIAATHRNLE
QLVAQGRFRQ DLYFRLKIVQ KSIKPLRERP CDLTLLIDQF GDAMRQKHGL PTVQLPPDTR
AALERYRWPG NAREVRNVIE AAVLCADGAI GLECLPPEVT RPPETSTEPV VAGTAGEGLA
AVRDYERQLI LGLLRKYRKV NHVASALGIA RSTLYRKFAE LAIDQSEFTQ AGHDERPIAR
DGIH
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