| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0353 |
|---|
| Symbol | |
|---|
| ID | 4786844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 387784 |
|---|
| End bp | 389481 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640088908 |
|---|
| Product | putative long-chain-fatty-acid--CoA ligase protein |
|---|
| Protein accession | YP_001019550 |
|---|
| Protein GI | 124265546 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.333466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATGC CGGCCAAGAA GCCCTGGCTC GCCCACTACC CCCCCTCGGT GGCGGCCACG
GTCGATGCCG GCTCCGACGC CTCGCTGTCG ACGCTCCTCG ACCAGGCCTT CCGGCAGCAT
GCCGCACGCC CCGCGGCCGT GCTGATGGGG CGCGAACTCG GTTTCCGCCA GATCGACGAG
CTGGCCGACG CCCTGGGCGC CTGGCTGCAG GCCAGGGGCG TCGTGAAGGG CACGCGCGTG
GCGCTGATGA TGCCCAACCT GCTGCAGTAC CTGGTGGCGC TCGCGGCGGT GCTGCGCGTC
GGCGCCGTGG TGGTCAACGT CAACCCGCTC TACACCGCGC GCGAACTGCA GTTCCAGCTC
AAGGATTCCG GCGCCGAGGT GATCGTGGTC CTCGAGAACT TCGCGGCGAC GCTCGAGGAG
GTGATCGACC GTACGGTCGT CAAGCACGTG GTGCTGGTCT CGATGGGCGA CCTGCTGGGC
TTCTGGAAGG GCCAGCTGGT CAACTTCGTG GTGCGCAACG TCAAGAAGAT GGTGCCGGCC
TTCACGCTGC CGCTCACCGA GGGGCGCAGC GTCACGCGCT TCAACATGGC CATCGCCGAG
GGCACGCGCC TGAAGCTCGT GCGCCCGTCG GTGGGGCCGG ACGACGTGGC CTTCCTACAG
TACACCGGCG GCACCACCGG CGTGTCCAAG GGCGCCACGC TGCTGCACCG CAACGTGGTG
GCCAACGTGA TGCAGACCGA GGCCTGGTTC CGGCCCATGC TCGACAAGGT CGGCGGCCAG
CAAATCGTCT GCGTCTGTGC GCTGCCGCTG TATCACATCT ATGCGCTGAT GCTGTGCTTC
GTGATGGGCG CGCGCCTGGG CATGAAGAAC CTGCTGATCC CCAATCCGCG CGACATCCCC
GGCCTCGTCA AGACGCTGAC GAAGCACCGC GTCAACATGT TCCCGGCCGT CAACACGCTG
TTCAACGCGC TGGCCAACAA CGCCGAGTTC GCGCGGCTCG ACTTCTCCGG TCTGGTGGCG
TCCACCGGCG GTGGCATGGC CTGCCAGCAG GCCACCGCCG AGAAATGGCT GCGCATCACC
GGCTGCCCGA TGGTCGAGGG CTACGGCCTG TCGGAGACCT CGCCGCTGGT CACCTGCAAC
CGGCTGGACC TGCGGCAGTT CAGCGGCAAC GTCGGCCTGC CGATCCCGTC GACAGAGATC
GCGATCCGTG ACGACGACGG CCGCGACCTG CCGCTCGGCG AGGCCGGCGA AGTCTGCATC
CGCGGGCCGC AGGTGATGGC CGGCTACTGG AACCGCCCCG ACGAGACCGC CAAGGTCATG
ACGCCGGACG GCTACTTCAA GTCGGGCGAC ATCGGCGTGC TGGACGAGCG CGGCTACCTC
CGCATCGTCG ACCGCAAGAA GGACATGATC ATCGTCTCCG GCTTCAACGT GTACCCCACC
GAGATCGAGC AGGTGGTCAA CCTGCACCCC GGCGTGCTGG AGTGCGCGGC GGTGGGCGTG
CCCGACGAGA AGACCGGCGA GGCGGTCCGG CTGTTCGTCG TGCGCAAGGA CCCGTCGCTC
ACCGAGCAGC AGCTGGCCGA CCACTGCCGG CAGAACTTCA CCGCCTACAA GCGGCCGCGG
CGCATCGAGT TCCGCGACGA CCTGCCCAAG AGCAACGTCG GCAAGATCCT GCGTCGCGAG
CTGCGCGGCC CAGGCTGA
|
|---|
| Protein sequence | MDMPAKKPWL AHYPPSVAAT VDAGSDASLS TLLDQAFRQH AARPAAVLMG RELGFRQIDE
LADALGAWLQ ARGVVKGTRV ALMMPNLLQY LVALAAVLRV GAVVVNVNPL YTARELQFQL
KDSGAEVIVV LENFAATLEE VIDRTVVKHV VLVSMGDLLG FWKGQLVNFV VRNVKKMVPA
FTLPLTEGRS VTRFNMAIAE GTRLKLVRPS VGPDDVAFLQ YTGGTTGVSK GATLLHRNVV
ANVMQTEAWF RPMLDKVGGQ QIVCVCALPL YHIYALMLCF VMGARLGMKN LLIPNPRDIP
GLVKTLTKHR VNMFPAVNTL FNALANNAEF ARLDFSGLVA STGGGMACQQ ATAEKWLRIT
GCPMVEGYGL SETSPLVTCN RLDLRQFSGN VGLPIPSTEI AIRDDDGRDL PLGEAGEVCI
RGPQVMAGYW NRPDETAKVM TPDGYFKSGD IGVLDERGYL RIVDRKKDMI IVSGFNVYPT
EIEQVVNLHP GVLECAAVGV PDEKTGEAVR LFVVRKDPSL TEQQLADHCR QNFTAYKRPR
RIEFRDDLPK SNVGKILRRE LRGPG
|
|---|
| |