| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0272 |
|---|
| Symbol | |
|---|
| ID | 4786941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 294607 |
|---|
| End bp | 295956 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640088824 |
|---|
| Product | Sun protein |
|---|
| Protein accession | YP_001019469 |
|---|
| Protein GI | 124265465 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.432064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0030391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCTC CTGTACCGCC GTCCCTCCCG CTGGCCACCC TGCTGGCGCA CACCGCCGAC
GCGGTGGCTG CGGTGTGTGC CGGGCGCTCG TTGACCGATG CGCTGGCGAC CGTGCCGGCG
GCGCCGCGCC CGGGCACGCA GGCGCTGGCG TTTCGCGTGC TGCGCGGCCT CGGCCTCGCC
CGGGCGCTGC GATGCCAACT CGTACCGAAG GCACCGCCGG CCTGGGTCGA TGCACTGCTG
CTCAGTGCGC TCGCCCTGTC GCACCAGGAT GCGGAGAGCG CCGACACCCC ACCCTACGCG
CCGCACACGC TGGTGAGCCA GGCGGTGGAG GCGGCCAAGC AGCGCGCACG GGCACAGGCC
GGCTTCGTCA ACGCGGTGCT GCGGCGCCAT CTGCGGGAGC AGGCAACGCA GGCCGCGGCC
GCGGCGAAGG ATCCTGTCGC CGTATGGAAC CATCCGCGCT GGTGGATCGA GACACTGCAG
CGCGACTGGC CAGGGCAGTG GGCCGAGCTG TTGCGTGCCA ACGACCGGCG TGCGCCGATG
ACGTTGCGCG TCAATCAACG GCAGCAGGAC AGAGCCAGCT ACCTGCTGCG CCTGGAGCAG
GCGGGCATCG CTGCCCATGC CGTGACCCGG CCTGGCGCGA TCGATGCCCA GGCCATCGAG
CTCGCGACGC CCTGCGCTGT GTCCGCACTG CCGGGCTTTG CCGACGGCGC GGTGTCGGTG
CAGGACCTCG CGGCCCAGGT GGCGGCCCCC CTGCTGCTGG GCGCTGGCCT GGCGCCTGGC
GCCCGGGTGC TCGACGCCTG TGCGGCGCCC GGCGGCAAGA CGGCTCACCT GCTCGAGCTG
GCCGAGCTCG ACCTGCTGGC CCTGGACGCC GACCCGCGGC GGCTGGTGAA GGTGAGCGAG
ACGTTGCAGC GCCTCGGCCT GCGGGCACGC ACCCAGGCCG CAGACGCACG CGACGTCGTC
GCCTGGTGGG ACGGCCGGCC CTACGATGCC ATCCTGCTCG ACGCGCCCTG CAGCGCCTCG
GGCATCGTGC GACGCCACCC CGATGTGCGC TGGCTGCGCC GTGCCTCGGA CCTCGATGCG
CTGGCGTCGA CCCAGGCTGA GCTGCTCGAT GCGTTGTGGC CGCTGTTGCG GCCCGGCGGG
CGGCTGCTCT ACGCCACCTG CTCGGTCTTC AAGGCCGAAG GCGCGCATCA GATCGACGCT
TTTTTGCAAC GCGCACCCGA TGCCATCGCG CAGCCTTCAC CCGGCTACCT GCTGCCGGTG
GTCGACAATC CCGGACAGGT GAGCGAGGGG CCGCTGCGGC CTTCGACGGA CGGTTTCTAT
TACGCGCTGC TCGAAAAGCG TTCGTCCTGA
|
|---|
| Protein sequence | MSAPVPPSLP LATLLAHTAD AVAAVCAGRS LTDALATVPA APRPGTQALA FRVLRGLGLA
RALRCQLVPK APPAWVDALL LSALALSHQD AESADTPPYA PHTLVSQAVE AAKQRARAQA
GFVNAVLRRH LREQATQAAA AAKDPVAVWN HPRWWIETLQ RDWPGQWAEL LRANDRRAPM
TLRVNQRQQD RASYLLRLEQ AGIAAHAVTR PGAIDAQAIE LATPCAVSAL PGFADGAVSV
QDLAAQVAAP LLLGAGLAPG ARVLDACAAP GGKTAHLLEL AELDLLALDA DPRRLVKVSE
TLQRLGLRAR TQAADARDVV AWWDGRPYDA ILLDAPCSAS GIVRRHPDVR WLRRASDLDA
LASTQAELLD ALWPLLRPGG RLLYATCSVF KAEGAHQIDA FLQRAPDAIA QPSPGYLLPV
VDNPGQVSEG PLRPSTDGFY YALLEKRSS
|
|---|
| |