| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0216 |
|---|
| Symbol | holA |
|---|
| ID | 4784001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 233764 |
|---|
| End bp | 234855 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640088767 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001019413 |
|---|
| Protein GI | 124265409 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.533896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCA AGCCCGACCA GCTCGATGCG CATCTGAAGA AGGGCCTGCG TCCGCTGTAC
ACGCTGCACG GCGACGAGCC GCTGCTGGCG CTGGAGGCGA GCGACGCCAT CCGCGCCGCG
GCGCGCGATG CCGGGCACAC CGAGCGCGAG GTCCATCATG TCGCCGGCGC GCACTTCGAC
TGGAGTTCGC TGCTCGGCGC GGCCAGCTCG ATGAGCCTGT TCGCCGAGGC CAAGATCGTC
GAGATCCGCA TCCCGTCGGG CAAGCCGGGC AAGGACGGGT CGCAGGCGCT CCAGCACTAT
TGCGAACACC TGCCCGAGGG CGTGGTGACG CTGGTCACGC TGCCGCGGCT GGACCGCCAG
CAGTCGGGCA GTGCCTGGTT CGGCGCGCTG GAATCGGCCG GCGTGACGCT GCGCCTCGAC
CCGGTGGAAC GTCAGGCGCT GCCGCAGTGG ATCGCGCAGC GCCTCGCGGC GCAGAACCAG
CGCGTCGCCG CCGACGAGGA GGGGCAGCGC ACGCTGGCTT TCTTTGCCGA CCGGGTCGAG
GGCAACCTGC TGGCGGCCCA GCAGGAGCTC ACCAAGCTCG GCCTGCTGTA CCCGGCCGGC
GAACTGAGCT TCGAACAGGT CGAGGCGGCG GTGCTGAATG TGGCGCGCTA CAGCGTCTTC
AAGCTCGGTG AGGCGGTGCT GGCCGGCCAG GTCTCGCGCG TGCTGCGCAT GCTCGACGGC
CTGCGCGCCG AGGGCGAAGC TGCCGTGCTG GTGCACTGGA CGCTGGCCGA GGACATCCGT
GCATTGCGGC GCTGCAAGGA CGCCGTCGCG GCCGGCAAGC CGCTGCCGAT GGCGCTGCGC
GAGAACCGCA TCTGGGGCCT CAAGGAGCGC CTCTTCGAGC GCGCGCTGCC CCGGCTCGGC
GACGGCACGA TCGACCACCT GATCGAGGCC GCCCATGTCT GTGACGGCCT GGTCAAGGGT
CTGAAGCACC CGCAGTGGCC GCAGGACCCC TGGATCGGCC TGCAGCGGCT GGCGCTGCAG
CTGGCGGGAT CGATGCAGGC GGCCCAGCTG CCGCGCGGCA CCCCGTCGCA GCGGCTCGTG
CTGCAGGCCT GA
|
|---|
| Protein sequence | MQIKPDQLDA HLKKGLRPLY TLHGDEPLLA LEASDAIRAA ARDAGHTERE VHHVAGAHFD
WSSLLGAASS MSLFAEAKIV EIRIPSGKPG KDGSQALQHY CEHLPEGVVT LVTLPRLDRQ
QSGSAWFGAL ESAGVTLRLD PVERQALPQW IAQRLAAQNQ RVAADEEGQR TLAFFADRVE
GNLLAAQQEL TKLGLLYPAG ELSFEQVEAA VLNVARYSVF KLGEAVLAGQ VSRVLRMLDG
LRAEGEAAVL VHWTLAEDIR ALRRCKDAVA AGKPLPMALR ENRIWGLKER LFERALPRLG
DGTIDHLIEA AHVCDGLVKG LKHPQWPQDP WIGLQRLALQ LAGSMQAAQL PRGTPSQRLV
LQA
|
|---|
| |