| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0108 |
|---|
| Symbol | |
|---|
| ID | 4784510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 110768 |
|---|
| End bp | 112555 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640088655 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001019305 |
|---|
| Protein GI | 124265301 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.179764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.109981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCCG GCGGCGACGC GCTGGTGCTG ATGCCCACCG GCGGTGGCAA GAGCCTGTGC
TACCAGGTGC CGGCGATCGC GCGCCACCGC GCCGGCCACG GCGTGGCCGT GGTGGTGAGC
CCGCTGATCG CGCTGATGCA CGACCAGGTC GGCGCGCTCG AGGAAGCCGG CGTGCATGCG
GCCTTCCTCA ACTCCTCGCT CGAACTCGCC GACGTGCAGC GCATCGAGCG CGAGATGATG
AGCGGCCGCC TGGTGCTGCT GTACGCTGCG CCGGAGCGGC TGACCACGCC GCGCATGCTG
GGTCAGCTCG ACTCGCTGCA CGAGCGCGGA CTGCTGAGCC TGTTCGCGAT CGACGAGGCG
CACTGCGTGA GCCAGTGGGG CCACGACTTC CGCGAGGACT ACCTGGGCCT GCACGTGCTG
CACGAGCGCT ATGCCGACGT GCCGCGCATC GCGCTCACCG CGACGGCCGA CGAGCACACG
CGCGCCGACA TCGTGTCGCG CCTGCAGCTC GAGGACGCGC GCGTCTTCAT CAGCAGCTTC
GATCGGCCGA ACATCCGCTA CCGCGTGGTC GAAAAGGACG ATCCGCGCAA GCAGCTGCTG
CGCTTCATCG GCGACGAGCA CGAGGGCGAT GCCGGCATCG TGTACTGCCA GTCGCGCAAG
AAGGTCGACG AGACCGCGGC CTGGCTCGAG ACGGAGGGCA TCACCGCGCT GCCCTACCAC
GCCGGGCTCG ACGCCGCGGT GCGGCAGCGG CACCAGAACC GCTTCCTGCG CGAGGACGGC
ATCGTGATGG TCGCGACCAT CGCGTTCGGC ATGGGCATCG ACAAGCCCGA CGTGCGCTTC
GTCGCCCACC TCGACCTGCC GAAGAACATC GAGAGCTACT ACCAGGAGAC CGGCCGCGCC
GGCCGCGACG GCGAGCCCGC CGAGGCCTGG ATGGCCTACG GCCTGGCCGA CGTGGTGAAC
CAGCGCCGCA TGATCGACGA CAGCCCGGCC GGCGAGGAGT TCAAGCGCGC CCAGCGCGGC
AAGCTCGACG CGCTGCTGGC GCTGGCCGAG GCGCACGACT GCCGCCGCAT GCGGTTGCTC
GATTACTTCG GCGAGCCCAG TCGGTCCTGC GGAAACTGCG ACAACTGCCT GAATCCGCCG
GCGGTGTGGG ACGCCACCGA GGCCGCGCGC AAGCTGCTGT CGTGCATCTA CCGCTTCGGT
CAGCACGGCC GCGGGCCGCG CAGCTTCGGC GCCGCTCACC TGATCGACGT GCTGCGCGGC
AAGGCCACCG AGAAGGTCGC ACAGTACGGC CACGACGGCC TGTCGACCTT CGGCGTCGGC
GCCGACCTGT CCGAGCAGCA GTGGCGAGGC GTGCTGCGCC AGCTGGTCGC GCTGGGCCAT
GTGGTGTCCG AGGGCGAATA CAACACGCTG GCGCTGACCG ACGGCGCGCG CGCGGTGCTC
AAGGGCGAGG TGCAGTTGCT GCTGCGCGTG CCGAGCGACA CACCGAAGCG CGGACGCCTC
GCCCGCGGCG GTGGCAGCGC CGGCCGGGGT GCGAAGGGCA GCGGCGCGCC AGCCGACCTG
GACGCCGCCG CGCAGGTTCG CTTCGAGGCC TTGCGCGCCT GGCGCGGCGA GGTGGCGCGT
GAGCACAACC TGCCCACCTA CATCATCTTC TCGAACGCCA CGCTGGCCGA GATGGCGCGC
CGTGCGCCGG CCACGCTGGG CGACCTGGGC GAGGTCAGCG GGGTCGGCGC GAAGAAGCTC
GAGGCCTACG GGCGCGAGAT CCTGCGGGTG CTGGACGCGG GGCGCTGA
|
|---|
| Protein sequence | MSAGGDALVL MPTGGGKSLC YQVPAIARHR AGHGVAVVVS PLIALMHDQV GALEEAGVHA
AFLNSSLELA DVQRIEREMM SGRLVLLYAA PERLTTPRML GQLDSLHERG LLSLFAIDEA
HCVSQWGHDF REDYLGLHVL HERYADVPRI ALTATADEHT RADIVSRLQL EDARVFISSF
DRPNIRYRVV EKDDPRKQLL RFIGDEHEGD AGIVYCQSRK KVDETAAWLE TEGITALPYH
AGLDAAVRQR HQNRFLREDG IVMVATIAFG MGIDKPDVRF VAHLDLPKNI ESYYQETGRA
GRDGEPAEAW MAYGLADVVN QRRMIDDSPA GEEFKRAQRG KLDALLALAE AHDCRRMRLL
DYFGEPSRSC GNCDNCLNPP AVWDATEAAR KLLSCIYRFG QHGRGPRSFG AAHLIDVLRG
KATEKVAQYG HDGLSTFGVG ADLSEQQWRG VLRQLVALGH VVSEGEYNTL ALTDGARAVL
KGEVQLLLRV PSDTPKRGRL ARGGGSAGRG AKGSGAPADL DAAAQVRFEA LRAWRGEVAR
EHNLPTYIIF SNATLAEMAR RAPATLGDLG EVSGVGAKKL EAYGREILRV LDAGR
|
|---|
| |