Gene Mpe_A0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpe_A0105 
Symbol 
ID4784507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylibium petroleiphilum PM1 
KingdomBacteria 
Replicon accessionNC_008825 
Strand
Start bp107874 
End bp108602 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content73% 
IMG OID640088652 
ProductDNA-directed RNA polymerase specialized sigma subunit sigma24-like protein 
Protein accessionYP_001019302 
Protein GI124265298 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00328358 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.102499 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTCGC GCCGTTCAAC CCCGTTCGCG GCCCTCGCAC GTACAAGCCC GAACCGCCGC 
GATGGCAGAC TGAGCAGGCC CATGCCCGAC CCCACGCCCG AACCCTCCGA CGACACGCTG
ATGCAGGCCT TCGCCGGCGG CGACGCGCGC GCCTTCGAAC GGCTCTACGC ACGCCACCAC
GTCGCGCTCT ACCGCTTCGT GCGCAGGCTG CTCGGCAGCG CCTGCGCGGC ACAGACCGAC
GAGGTGTTCC AGGACACCTG GCTGCGCGTG ATCGACGCGC GCACCCGCTG GGCACCGCAG
GGCGCGAGCT TTCGCACCTG GCTGTTCACG CTGGGCCACC ACCGCGCGGT CGATTGCCTG
CGCAGGAGCG GCCGGGAGGT ATCGGTCGAC GCGCCGGGGC CCGACCCCTG GGAACCCGAC
GGCGAGCCTT GGGCCCGCTG GCCGGTCGCC CACGGCGCCG ACGGGCAGGG CGTCGACGAC
CAGGCCTTCT GGCGTGCGGC CGGCCAGCGC CTGCTCGACT GCCTGGATGG CCTGCCCGCC
GCGCAGAAGG CGGTGTTCCT GCTGCACCAC GAGGACGGCC TGTCGCTCGC CGAACTGGCC
GCCGCGCTGG AACTGGGTTT CGAGACCGCC AAGAGCCGGC TGCGCTATGC GATGAGCAAG
CTGCGCACCT GCATGGGCGC CTACCTGCCC GGTGCGGGCG TGCTGACCGC GCCCGAGGGG
AGCGCATGA
 
Protein sequence
MPSRRSTPFA ALARTSPNRR DGRLSRPMPD PTPEPSDDTL MQAFAGGDAR AFERLYARHH 
VALYRFVRRL LGSACAAQTD EVFQDTWLRV IDARTRWAPQ GASFRTWLFT LGHHRAVDCL
RRSGREVSVD APGPDPWEPD GEPWARWPVA HGADGQGVDD QAFWRAAGQR LLDCLDGLPA
AQKAVFLLHH EDGLSLAELA AALELGFETA KSRLRYAMSK LRTCMGAYLP GAGVLTAPEG
SA