Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A0050 |
Symbol | |
ID | 4783807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | + |
Start bp | 47465 |
End bp | 48262 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640088597 |
Product | RNA polymerase sigma factor for flagellar operon |
Protein accession | YP_001019247 |
Protein GI | 124265243 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00204994 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.175204 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCCCC GCAAGCCAGG GACTCAAGTT CCAGCGGCGG TGACCGACAA CACGGCCATG GCTCCCTCCA CCGCCGACAC CGCGGCCACC GTGCGCAACG AGCAGTTGCA CCAGCACGGC GCGCTGGTGC GCCGCATCGC CAAGCGCATG CGCGCGCGGC TGCCGGCCAA CGTGGAGATG GACGAGCTGT TGCAGGCCGG CCTGATCGGC CTGAACGAGG CGATCACCCG CTTCGAGGAA AGCTTCGGCG CCAGCTTCGA CACCTATGCC TCGCGCCGCA TCGAAGGCGC CATGCTCGAC AGCCTGCGCG CCGCCGACAC CCTGTCGCGC GACGCCCGTG CCCACCAGCG CGCCATCCGC GCCGCGGTGC AGGCGCTCGA GCACCGCCTG CTGCGCCCGC CGCGCGCGAT GGAAGTGGCC AGCGAGCTCG GCTGGTCGCT GGCGCGCCTG CACCAGCGCC TGGTGGAGGC CGGCGCCGCC GGCCAACGCG CCGGCGACGC GCCGCTCGAC GGCCTGGCTG ACGAGGCCTC GGCCCGCGGC GCCGAGGACG ACCTGCACGC CACCGCCGAC GACCACGCCG ACCCGCTGGC CGCCCTGCAG CGCCGCCAGC GCACGACAGC CCTCAACGCG GCGTTCGACA CGCTCGAAGA GCGCGAGCAG CTGATGATGA AGATGATCTA CGAGCGCGGC CTGGACCACC AGGACGCCGC CGAGTCGCTG GGCGTCAGCC CCTCGCGCGT GTCGCAGATG CACGCGGTGG TGGTGCAGAA GCTCAAGCGG CGGTTGAAGG ACTGGTAG
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Protein sequence | MSPRKPGTQV PAAVTDNTAM APSTADTAAT VRNEQLHQHG ALVRRIAKRM RARLPANVEM DELLQAGLIG LNEAITRFEE SFGASFDTYA SRRIEGAMLD SLRAADTLSR DARAHQRAIR AAVQALEHRL LRPPRAMEVA SELGWSLARL HQRLVEAGAA GQRAGDAPLD GLADEASARG AEDDLHATAD DHADPLAALQ RRQRTTALNA AFDTLEEREQ LMMKMIYERG LDHQDAAESL GVSPSRVSQM HAVVVQKLKR RLKDW
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