Gene P9303_26021 details

Gene Information

• Locus tag: P9303_26021
• Symbol: rimM
• ID: 4778598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9303
• Kingdom: Bacteria
• Replicon accession: NC_008820
• Strand: +
• Start bp: 2295074
• End bp: 2295619
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640088124
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001018597
• Protein GI: 124024290
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTTTCTC CGCCCATGAA CGGCGACGAA GACTGGCTCA CCGTGGGGAA ACTGGTGGCC 
GCCCAAGGAA TGCAAGGTGA ACTACGCATC AACCCCAGCA GTGACTTCCC TGAACGCTTC 
ACTCTTCCTG GTCAACGCTG GCTCAAAGAA CGCAATGGTG AGCCACGACC TATTGAATTG 
CTGACTGGAC GTCAACTACC TGGCAGGTCG CTCTATGTCG TGAAATTTGC TGGGGTGAAC 
AATCGCAATG CGGCCGAAGC GCTTGTAGGC CAAAACCTAC TGGTGCCTTC AAGTGATCGT 
CCTAGCCTGG CCGAAGGCGA GTTTCACCTG CTTGATTTGG TCGGCCTCGA AGCCCGTTTG 
CAAGCGGAAG GCCCTGCAAT CGGTCATGTC ATCGACCTCA CCACCGCCGG GAACGACCTC 
CTCGAGATCG AATTACTGGC AGGACGGCGG GTTCTGGTTC CCTTCGTAGA AGCCATCGTG 
CCAGAAGTGC AACTCAATCA AGGCTGGCTC CGACTCACCC CGCCTCCTGG ACTGCTAGAG 
CTCTAA 

 

Protein sequence

MLSPPMNGDE DWLTVGKLVA AQGMQGELRI NPSSDFPERF TLPGQRWLKE RNGEPRPIEL 
LTGRQLPGRS LYVVKFAGVN NRNAAEALVG QNLLVPSSDR PSLAEGEFHL LDLVGLEARL 
QAEGPAIGHV IDLTTAGNDL LEIELLAGRR VLVPFVEAIV PEVQLNQGWL RLTPPPGLLE 
L