| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_24821 |
|---|
| Symbol | lytB |
|---|
| ID | 4777595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | + |
|---|
| Start bp | 2180019 |
|---|
| End bp | 2181215 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640088003 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001018478 |
|---|
| Protein GI | 124024171 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACAC AAGCTTTCAA ACGCTCGCTA CACCACTCTG AGCGTTACAA CCGTAGGGGC
TTCGGGCGAG CCAACGAAGT CGCCAGCAAC CTTGAGAAGG CCTACCAAAG CAGCCTAATT
GGCTCGATCC GAGACAACGG GTATGTGCTT CAACATGGCC GACTTCAGGT GAAATTGGCT
GAGGCCTTTG GTTTCTGCTG GGGAGTAGAG CGAGCAGTTG CGATGGCTTA TGAAACCCGT
AGGCACTACC CAAGCGAGCG CATTTGGATA ACTAACGAAA TTATTCACAA CCCTTCAGTG
AATGAACACT TACGCGAAAT GGACGTGCTG TTCATCCACG CTGAAGGAGG TGTTAAAGAT
TTTTCCTGCG TCAGTGACGG CGATGTAGTG ATCCTGCCCG CCTTCGGTGC CACTGTTCAG
GAGATGGAGC TACTTCATGA GCGTGGCTGT CACATCATCG ACACCACTTG TCCATGGGTT
TCCAAGGTGT GGCACACCGT GGAGAAACAT AAGAAGCAAG AATTCACCTC AATTATTCAT
GGCAAGGTGA AGCATGAAGA AACCTTGGCC ACCAGCTCCT TTGCGGGGAC CTATTTAGTT
GTTTTAGACC TTGATGAAGC CCAACTAGTC GCCGATTACA TCCTGGGCCA AGGAGATCGT
GCTGCGTTCA TGAAACGCTT TGCCAAGGCA TGCTCTGCAA ACTTTGACCC AGATCAAGAT
CTCCAACGCC TTGGGGTGGC CAATCAGACC ACCATGCTGA AAAGTGAAAC CGAGGAAATC
GGTCGTTTAT TCGAGCGCAC CATGCTCAGA AAATATGGCC CAATAGAGCT CAACAAACAT
TTCCTTTCCT TCAACACCAT CTGTGACGCC ACAGAGGAAC GGCAACAAGC AATGTTCTCG
CTAGTTGATG AACCTCTAGA TCTACTCGTG GTGATTGGTG GTTTCAACTC ATCCAACACC
ACTCACCTAC AGGAAATCGC CATCAGCCGA GGGATCCGAT CCTTCCACAT CGATACCCCA
GAACGTATTG GTGATAACAA CAGCATCCAA CACAAGCCAC TGGGAGAAGA TCTGTTCATC
GAAAGTAATT TTCTACCTGC TGGCAGCGTG AATGTTGGCA TCACCTCCGG AGCCTCAACA
CCCGATCGAG TTGTTGAACA TGTGATTCAG AAGCTGATCG ACCTAACCTC CGACTGA
|
|---|
| Protein sequence | MDTQAFKRSL HHSERYNRRG FGRANEVASN LEKAYQSSLI GSIRDNGYVL QHGRLQVKLA
EAFGFCWGVE RAVAMAYETR RHYPSERIWI TNEIIHNPSV NEHLREMDVL FIHAEGGVKD
FSCVSDGDVV ILPAFGATVQ EMELLHERGC HIIDTTCPWV SKVWHTVEKH KKQEFTSIIH
GKVKHEETLA TSSFAGTYLV VLDLDEAQLV ADYILGQGDR AAFMKRFAKA CSANFDPDQD
LQRLGVANQT TMLKSETEEI GRLFERTMLR KYGPIELNKH FLSFNTICDA TEERQQAMFS
LVDEPLDLLV VIGGFNSSNT THLQEIAISR GIRSFHIDTP ERIGDNNSIQ HKPLGEDLFI
ESNFLPAGSV NVGITSGAST PDRVVEHVIQ KLIDLTSD
|
|---|
| |