| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_19461 |
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| Symbol | trmD |
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| ID | 4778846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9303 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008820 |
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| Strand | - |
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| Start bp | 1710654 |
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| End bp | 1711886 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640087456 |
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| Product | putative bifunctional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001017953 |
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| Protein GI | 124023646 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase
[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCTT TTCGCCTCGA TGTAGTGACT TTGGTGCCAC AGGCGTTTAC TCCTCTTGGT
GAACTCGGGG TGATTGGTCG TGCGTTTGCC TCTGGTATCG CTGCCTTGCA CACCCATAAT
CCCCGCGATT ACACCACGGA TCGCTACCAC AAGGTTGATG ATCAGCCTTA TGGCGGTGGT
GCTGGCATGG TGCTTAAGCC AGAACCAGTC TTTGCTGCTT TTGAGGCGAT TCCTGTTCAG
TCGCGACGGC GGGTGCTGCT TCTGACCCCT CAGGGAAAAC CGCTATGCCA GAAGGATTTG
CATCGTTGGG TAGTGGACCA CGATCAGCTT GTGCTGATCT GCGGGCATTA CGAAGGTTTT
GATGAGCGGA TCAGAGGTTT GGCAGATGAG GAGGTGTCTG TAGGGGATTT TGTGCTCACC
GGTGGTGAGC TACCAGCAAT GACGGTGATC AATGGGGTGG TGAGGTTGTT ACCGGGAACT
GTTGGAACGG CAGAGTCGCT GCAGGATGAG AGTCATAGCG ATGTCCTCCT CGAGCATCCT
CACTACACAA GGCCAGCGAA TTTTCGCGGC ATGGTTGTTC CAGATGTGTT GCGCAGTGGT
GATCATGGTG CGATTGCTCT GTGGCGACAG CAACAGCGGC AGCTGCGTAC GCAGCTGCGT
CGTCCGGATC TCTATGTTCG CTGGTCTGAT CAGCAGCAAT CATCAACACT GACAATGGAG
TCCCATGGTT CTGCCTCCAT GCAGTTTCGT ATCGGCAACG GCTATGACAT TCATCGCTTA
GTGCCCGGTC GCCCCTTGAT TCTTGGTGGC GTGACACTTG ATCATCCCGA TGGGTTGGGG
CTCGATGGTC ACAGCGATGC TGATGTTCTT GTTCATGCGC TGATGGATGC CTTGCTTGGG
GCTCTTTCGT TAGGCGATAT CGGTAAATAT TTTCCGCCGG ATGATCCCCG CTGGAAAGGG
GCCGATAGCT TGATGCTGCT TGAGCAGGTT GTGGCTCTGG TACGAGATCG CGGCTGGCAG
GTTTTGAATG TGGATGCCGT GGTGGTGGCT GAGCGTCCCA AGCTCAAGCC TCATATCAAT
GCGATGCGCA GCAACCTGGC ACAACGGTTG GGGGTGGAAT TGGATGCCGT GGGTGTGAAG
GCCACCACCA ATGAAGGGCT TGGACCGGAA GGTCGAGAGG AGGGGATGAG TAGTCAGGCA
GTCGCACTGT TGCAGCAGAT AGGCCTGACA TGA
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| Protein sequence | MAPFRLDVVT LVPQAFTPLG ELGVIGRAFA SGIAALHTHN PRDYTTDRYH KVDDQPYGGG
AGMVLKPEPV FAAFEAIPVQ SRRRVLLLTP QGKPLCQKDL HRWVVDHDQL VLICGHYEGF
DERIRGLADE EVSVGDFVLT GGELPAMTVI NGVVRLLPGT VGTAESLQDE SHSDVLLEHP
HYTRPANFRG MVVPDVLRSG DHGAIALWRQ QQRQLRTQLR RPDLYVRWSD QQQSSTLTME
SHGSASMQFR IGNGYDIHRL VPGRPLILGG VTLDHPDGLG LDGHSDADVL VHALMDALLG
ALSLGDIGKY FPPDDPRWKG ADSLMLLEQV VALVRDRGWQ VLNVDAVVVA ERPKLKPHIN
AMRSNLAQRL GVELDAVGVK ATTNEGLGPE GREEGMSSQA VALLQQIGLT
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