Gene P9303_18801 details

Gene Information

• Locus tag: P9303_18801
• Symbol: menD
• ID: 4778095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9303
• Kingdom: Bacteria
• Replicon accession: NC_008820
• Strand: +
• Start bp: 1640931
• End bp: 1642757
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640087389
• Product: 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
• Protein accession: YP_001017887
• Protein GI: 124023580
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
• TIGRFAM ID: [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.342955
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGCTAAGG CTCAAGCTCT GTCTCTTGCT CACAACAATC TGCTGGTTTG CCTGAGCTTG 
CTCGAGGCAT TTCATGCCTT GGGGCTGCGC CATCTCGTGC TTTGTCCCGG CAGCCGCTCG 
GGGCCCCTTG CACTTGCTGC AGGAGGAATG GCACGTACCA ATCTCTTGCG GCTTAGCACT 
GCCATTGATG AGCGCTCTGC TGCTTTCTTG GCTTTGGGTT TTAGCACTGC TACTGGCACT 
GCAGCAGCTG TAGTAACCAC TTCGGGCACC GCTGTAGCCA ACCTTTTGCC TGCAGCGGTG 
GAGGCTGATC GATCCTGTCA GCCCCTGTTG CTGCTCACTG CTGACCGTCC CTATCGACTC 
AAAGATTGCG GTGCCAATCA AACGGTGAAT CAGGAGACTT TCTTGAGTCC TGCCTGTCGA 
TGGATTGGGC AGGGCCCAAG AGAGGGGTTG CATCTTTTCA GTACAGAAAC GCTGGAATCA 
TTCGCAGAGG AGGCCTGGCA ACGAGCTCAT CACCCGGCAG GAGCCGTTCA TCTCAATCTG 
CCTTTTGAGG AGCCTCTACA TCTCAGTGAA GAAGAGCAGA GGGTGATCTG GAAGGGGTGG 
TCTCCCAAGA TTCCACGTTC AGCTCCGATC ACGCCAACAA ATCTGGCAAT GGCAGCTGAG 
GGGACTGAGG GGGTTACCGA TCGGGCTCCC TTTGCATTGG ATCCCTTCCG ACCCGGCGTT 
GTGATAGCTG GTGCTTGGCG AGGCCTAAGT AAAGACCTCT TTGCTTTTCA GCAATCCTTG 
CGGGAGTGGC AGGCCTTGAG TGGCTGGCCC GTGCTGGCCG ATCCACTATC GGCTCTGCCT 
TCAGACCAAC CTGGTCTAAT CCGCTCCTGG GAGCTGCTTT TGGCTGCTGG GCTTTTAGGC 
TCTCATGAGC AGCTTCAAGT GCTGCGTCTA GGACCAATGT CAGCCAGTCG GAGCCTTGAG 
GCATGGTTGA AAAGCTTTGG TGACGGTCAG CTCCTAATTA CAGAGGGAGA CTCCCGTTGT 
CTCGATCCCC TTGGTTTGTC AGTGCAATGG AGTCATGGAT TGACGACCTG GTGGCAACAC 
CATCACCATC GCTGGATCGA TGCTGATGCC GCCTCTCAAC AGGCAACCCA GCCTCTACTG 
AAGAAATGGC AGATCATCGA TCGTTTTGCG CAGGACTGGC TAGATCAGCA GTTACCCCTG 
CAAGGTGCCA TCACAGAACC AGCCCTGGCG CGCTGGTTAT CCCGTCTTCT GCCAGCTGAG 
CTATCAATCA TGTTGGCAGC GAGTAGTCCT GTGAGGGACT GGCTGGCTTA TGCGGACAAG 
AGCTTATTTT CGAGACGATG CTTCAGTTTT CGAGGCGCGT CTGGTATCGA CGGCACCCTT 
TCTTTAAGCA TGGGTTTAGC GATGGCCCTT GGGCCCACTT TGCTTGTCAG CGGCGATCTA 
GCTCTCCTTC ATGACAGCAA TGGCTGGTTG CTTGCTCATC CCCAGCGCCC GCCTTTGGTG 
GTGGTGTTGA TCGACAATGG TGGCGGAGGC ATCTTTGAGC AGCTGCTGGT GAAGAAAGCT 
CCGAGCGAAG CATTTGAGCA GCTGTTTGCC ATGCCTCAGG CGGTTGACCC TCTTGTCCTT 
GCAGCGGCTC ATAACATTCC TCACCGTCAG GTGGCCTGTC TCGAAGACCT ACCAGCAGCC 
TTGGAGTGGG GGCTCTTCCA GACTGGACCT GTTTTGATAC GTGTATGCAC ACATCGGGGT 
CAAGATTCAT CGATGAGGCA ACAGCTTCGC GAGGGATTGG TGATGCATCT GCAGTCGATT 
TCCCAAAATG GCCACATTGA TCTTTGA 

 

Protein sequence

MAKAQALSLA HNNLLVCLSL LEAFHALGLR HLVLCPGSRS GPLALAAGGM ARTNLLRLST 
AIDERSAAFL ALGFSTATGT AAAVVTTSGT AVANLLPAAV EADRSCQPLL LLTADRPYRL 
KDCGANQTVN QETFLSPACR WIGQGPREGL HLFSTETLES FAEEAWQRAH HPAGAVHLNL 
PFEEPLHLSE EEQRVIWKGW SPKIPRSAPI TPTNLAMAAE GTEGVTDRAP FALDPFRPGV 
VIAGAWRGLS KDLFAFQQSL REWQALSGWP VLADPLSALP SDQPGLIRSW ELLLAAGLLG 
SHEQLQVLRL GPMSASRSLE AWLKSFGDGQ LLITEGDSRC LDPLGLSVQW SHGLTTWWQH 
HHHRWIDADA ASQQATQPLL KKWQIIDRFA QDWLDQQLPL QGAITEPALA RWLSRLLPAE 
LSIMLAASSP VRDWLAYADK SLFSRRCFSF RGASGIDGTL SLSMGLAMAL GPTLLVSGDL 
ALLHDSNGWL LAHPQRPPLV VVLIDNGGGG IFEQLLVKKA PSEAFEQLFA MPQAVDPLVL 
AAAHNIPHRQ VACLEDLPAA LEWGLFQTGP VLIRVCTHRG QDSSMRQQLR EGLVMHLQSI 
SQNGHIDL