Gene P9303_16221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9303_16221 
SymbolsecD 
ID4778613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9303 
KingdomBacteria 
Replicon accessionNC_008820 
Strand
Start bp1421058 
End bp1422545 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content53% 
IMG OID640087131 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001017631 
Protein GI124023324 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.130277 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGTC AACAAGGCTG GTTTGCGCTC ATTCTTGCTC TTGCCATTGC GGCAGGTTCT 
GTCACTGCAA GCTTTCCGCT TGAGTTGGGC CTTGATCTTC GTGGTGGCAG TCAGCTCACT
CTTGAAGTGC AGCCCGCTGG TGAGATCACT CGCGTGAAAG CCGAGCAGCT AGAGGCGGTC
AAAGCTGTTT TGGATCGTCG CGTCAATGGC TTGGGTGTTG CCGAATCCAC ACTGCAGACC
ATTGGTGACA ATCAACTGGT GTTGCAGCTT CCAGGAGAAC AGGATCCCAC CAGGGCTGCC
AAGGTGCTTG GCGAGACGGC CTTACTTGAG TTTCGAGCTC AAAAACCTGG CACAGAAGAG
GAGGTTCGCG GCCTTCAGCG CCTAAAACGA CAGGTAGAGA GCATTCTCAA GTCCAAGCAG
GAGCGTGCGA TATCCGGAGA GTCTCCCTCT GATGATGAAC TCGATAAACA GCAACTTGTT
GAAGCGCAGC AGGCCTTTGG TTTGCAAGGC AGTGTTGGCA GTGAGATCGA GCAGCTGGAA
CAGTTAAATG AGAAAGTCAG CATCAAGATC GCTGAACTCT TCGAGCCCAC GTCCTTAACC
GGGAAGGATC TAGTTACAGC TGGGCGTCAG CAACAGCAGA ACGTTCCTGA TAGCTGGGAG
GTGACACTTA GCTTCAACCG AGAAGGCGGA GATCAATTCG CCGAGCTAAC ACAATCAATT
GCTGGCACAG GTCGTCTACT TGGCATCGTT CTTGATGGAA GGTCGATCAG TGAAGCCAGC
GTCGGGGAAC AGTTCAGAGC CGCTGGCATT ACTGGTGGTG CGGCCACGAT CAGCGGTAAT
TTCAATGCTG AAGATGCCCG CGACCTGGAA GTTCAGTTGC GAGGTGGTTC GTTGCCATTA
CCAGTAGAAA TTCTCGAGGT TCGAACCATT GGTCCCACCC TTGGTGCTGA AAACATTCGC
CGCAGCTTGA TCGCAGCGCT CTCTGGTCTC GCCTTGGTGG CTGTTTTCAT GGTGGTGGCT
TATCGCCTTG CGGGCTTGGT GGCGGTGTTG GCATTGAGTC TTTATGCCCT GTTCAATCTG
GCTATGTATG CTCTGATTCC TGTCATCCTT ACCCTGCCTG GGATTGCTGG TTTCATCCTC
AGTATTGGCA TGGCAGTGGA TGCCAATGTG CTGATCTTTG AGCGTGTCAA AGATGAATTG
CGGCGTGGCA ACACCTTGAT TCGCTCGATC GAGACTGGAT TTTCCCAGGC TTTGTCGTCG
ATCGTTGACG GCCATCTCAC CACTCTGATT AGTTGCGCAG CGCTCTTTTT TCTGGGTACG
GGTTTGGTTA AAGGTTTTGC CGCCACCCTC GGCATCGGTG TTGTGCTCAG TTTGTTTACG
GCCTTGAGCT GCACTCGCAC TCTGCTGCGT TTTTTGATGG GCTATCAGGC TTTGAGGCGA
CCTACCAACT TTTTGCCTGC CAAACAGTTG CCTTCTTCTC TCGCCTGA
 
Protein sequence
MARQQGWFAL ILALAIAAGS VTASFPLELG LDLRGGSQLT LEVQPAGEIT RVKAEQLEAV 
KAVLDRRVNG LGVAESTLQT IGDNQLVLQL PGEQDPTRAA KVLGETALLE FRAQKPGTEE
EVRGLQRLKR QVESILKSKQ ERAISGESPS DDELDKQQLV EAQQAFGLQG SVGSEIEQLE
QLNEKVSIKI AELFEPTSLT GKDLVTAGRQ QQQNVPDSWE VTLSFNREGG DQFAELTQSI
AGTGRLLGIV LDGRSISEAS VGEQFRAAGI TGGAATISGN FNAEDARDLE VQLRGGSLPL
PVEILEVRTI GPTLGAENIR RSLIAALSGL ALVAVFMVVA YRLAGLVAVL ALSLYALFNL
AMYALIPVIL TLPGIAGFIL SIGMAVDANV LIFERVKDEL RRGNTLIRSI ETGFSQALSS
IVDGHLTTLI SCAALFFLGT GLVKGFAATL GIGVVLSLFT ALSCTRTLLR FLMGYQALRR
PTNFLPAKQL PSSLA