| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_11831 |
|---|
| Symbol | |
|---|
| ID | 4776408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | + |
|---|
| Start bp | 1038744 |
|---|
| End bp | 1040375 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640086692 |
|---|
| Product | zeta-carotene desaturase-like protein |
|---|
| Protein accession | YP_001017197 |
|---|
| Protein GI | 124022890 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3349] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.253964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAG GTTTTCCGGG TAAAAAGCAA TCTCATGCGG TTGTCATCGG GGCCGGCTGG
GCTGGCTGGG GTGCGGCCAA GGCACTCTGC GAAGCGGGTG TTCGCGTGAC CCTGATGGAT
GGGATGGCGG ATCCAACCGG CAGCCAGCCC CTCACCACGC CAAGCGGCAA ACCGTTCGAG
GCAGGCACCC GGGGGTTCTG GAAGGATTAT CCCAACATCA ATGCCCTGAC GGCAGAGCTC
GGGCTCGGCT CGATCTTCAC GGAGTTCACC ACTAGTGCGT TCTGGTCACC CGAAGGCCTG
GAGGCGACGG CTCCTGTCTT CGGTGACGCT CCGCTGTGGC CGAGTCCCCT GGGTCAGGTT
GCTGCAACGA TCAATAACTT CAAGCGCCTG CCTGTTGCTG ATCGGCTCAG CATCGCCGGC
CTGCTCTACG CCATGCTCGA TCTGAACCGC AGCGATGCGG TATACAGGAG CTACGACGCG
ATCGATGCGC TGACGCTGTT TAGACAGCTC AGGATCAGTG ATCGCATGAT CGATGATTTC
CTGCGGCCCA CGTTGCTGGT GGGGCTGTTT AAGCCGCCGG AGGAGCTGTC GGCCGCTGTC
ACGATGGAGC TCCTCTACTA CTACGCCCTG GCGCATCAGG ATTCCTTCGA TGTGCGTTGG
ATCAGGTCGA AAAGCATCGC CGAACAGCTG ATTGCGCCGC TCAGTGAGCG GCTGCAGGAG
CAGCATCAGC TCGAGGTGCT GGGCGGCACC CTGGCCACCC GGCTGAACAT CTCGCCGGAG
ACTCAGGCCA TCTGCTCGGT GGGAACCCGT TCCGTAACAA CTGGGAGCAC CGGTTTAATC
GAGGATGTCG ATGCCGTGGT GCTTGCCGTG AGTGCCAAAG GAATGGGTGC CTTGATGGCG
CAATCCCCGC AGTGCGGCGC GCTGGCGCCG GAGCTTGTGC GTGCCGCCAC GCTCGGATCG
ATCGATGTGG TGTCGATCCG TCTGTGGCTG GATCGCACCG TGCCGGTCGC CGATCCCGCC
AATGTGTTCT CACGTTTCAG CGCACTGAGA GGCGCCGGCG CCACCTTCTT CATGTTGGAT
CAACTGCAGC GGGAGTCGGA GCAGGCTCTC TGGGGTGATC AGCCAGCGCA GGGTTCGGTG
ATCGCCAGCG ATTTCTACAA CGCCTCGGCC ATCGTCGAGC TGAGCGATCA GGAGATCGTC
GACTGCCTGA TGCAGGATCT GCTGCCCATA GCGCAGCCTG CTTTCAGGGG GGCCAGGGTC
GTGGATCAGG AGGTGCGGCG TTATCCGGGT TCGGTGTCTC TCTTCTCGCC GGGAAGTTTC
AGCAAGCGGC CACCAATGGA GACGTCACTG GCTTCGGTGG TCTGCGCCGG CGACTGGGTG
CGGATGGGCG AGAAAGAACA TGGTGCTAAA GGCCTTTGTC AGGAACGCGC CTACGTGTGT
GGTCTGGAAG CGGGCAACTC ACTGCTCAGG CGCGGGATCG TGAGGGGCGC CGACCTGCCC
ACGGCCCTGC AGCACTCTGT GATCCCCATC CGCGCTGATG AACCGCAGGT GCTGCTCGGG
CGTGCCCTTA ACAAGCTGGT GATGGATCCC CTCGAGGCCT TCGGGATCCA GTGGCCTTGG
TTGGCTAGCT AG
|
|---|
| Protein sequence | MAEGFPGKKQ SHAVVIGAGW AGWGAAKALC EAGVRVTLMD GMADPTGSQP LTTPSGKPFE
AGTRGFWKDY PNINALTAEL GLGSIFTEFT TSAFWSPEGL EATAPVFGDA PLWPSPLGQV
AATINNFKRL PVADRLSIAG LLYAMLDLNR SDAVYRSYDA IDALTLFRQL RISDRMIDDF
LRPTLLVGLF KPPEELSAAV TMELLYYYAL AHQDSFDVRW IRSKSIAEQL IAPLSERLQE
QHQLEVLGGT LATRLNISPE TQAICSVGTR SVTTGSTGLI EDVDAVVLAV SAKGMGALMA
QSPQCGALAP ELVRAATLGS IDVVSIRLWL DRTVPVADPA NVFSRFSALR GAGATFFMLD
QLQRESEQAL WGDQPAQGSV IASDFYNASA IVELSDQEIV DCLMQDLLPI AQPAFRGARV
VDQEVRRYPG SVSLFSPGSF SKRPPMETSL ASVVCAGDWV RMGEKEHGAK GLCQERAYVC
GLEAGNSLLR RGIVRGADLP TALQHSVIPI RADEPQVLLG RALNKLVMDP LEAFGIQWPW
LAS
|
|---|
| |