| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_07291 |
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| Symbol | |
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| ID | 4777149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9303 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008820 |
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| Strand | - |
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| Start bp | 673670 |
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| End bp | 675004 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640086238 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001016745 |
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| Protein GI | 124022438 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCTG CAGCCACCCA AGCAGCAGCT GCAAAGGCCA AACCAAAAGC CTCTGCTAAG
ACTGCCAAAC CCCAAGTGGC CAAAGGCACG GTTAAAGCCA AAGCCAAGAA AGTCAAGGCA
ACAGCTCCTA AGGCCAAGAC TGCTGCCAAG CCGGTTAGTT CTGCTGCAAA AGCGTCCAGC
CCCAAAGCAA AAAAAGCAAA AGCCACCCCT ACCCCTACTG TCAGCAAAAA CCTTGATTTA
ACGGCTGACA AACTTCTTGC TACAGCCGCG ACAAGCGCCC CTAAGGCCAG CGCTGAAACT
GAAAGCAGCC AAGCTGCTGC TAAAGCAAGC AGCGAAGCAG ACGCGAAGGC CAGAGCTCTA
GCCAATATCA AGATCGGTCC TAAAGGCGTC TACACCGAAG ATTCCATCAG GGTTTATCTC
CAGGAGATCG GCCGTATCCG CCTGCTCCGT CCAGACGAGG AGATTGAACT AGCCCGCAAA
ATTGCTGACC TCCTGCATCT AGAGGAACTG GCAGAGCAGT TCAATAGTGA TCACGGTCAC
TACCCCAACA ACAAGGAATG GGCTGCCCTT GTTGAAATGC CCAACATCAA ATTCCGCCGT
CGCCTGATGC TGGGGCGCCG AGCCAAGGAA AAGATGGTGC AATCCAACCT GCGGCTGGTT
GTTTCGATCG CCAAAAAATA CATGAATCGA GGCCTGTCCT TCCAGGATCT AATCCAAGAA
GGCAGCCTGG GATTAATTCG TGCTGCCGAA AAATTCGACC ACGAGAAAGG GTACAAATTC
TCCACCTATG CCACCTGGTG GATCCGTCAA GCCATCACCC GAGCAATTGC CGATCAGAGC
CGCACAATCC GTCTTCCTGT TCACCTCTAC GAAACAATCT CACGCATCAA AAAAACAACC
AAAGTGCTGA GCCAGGAGTT TGGCCGTAAA CCAACAGAAG AGGAAATTGC CGAAAGCATG
GAGATGACAA TCGAAAAACT TCGATTTATC GCAAAAAGTG CTCAACTGCC CATCTCCCTT
GAGACTCCGA TTGGCAAAGA GGAAGATTCC AGACTTGGTG ATTTCATCGA ATCTGATACT
GAGAATCCAG AACAAGATGT CGCCAAAAAT CTCTTGCGAG AAGATCTAGA AGGTGTTCTC
GCAACCCTCA GCCCCCGCGA ACGTGATGTT CTGCGTCTGC GCTATGGCCT TGACGATGGC
CGCATGAAAA CCCTCGAGGA AATTGGACAG ATCTTTGAGG TCACACGAGA GCGCATCCGT
CAGATTGAAG CCAAAGCCCT GCGCAAACTT CGCCACCCGA ATCGCAATGG TGTCTTAAAG
GAATACATCA AGTAA
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| Protein sequence | MSPAATQAAA AKAKPKASAK TAKPQVAKGT VKAKAKKVKA TAPKAKTAAK PVSSAAKASS
PKAKKAKATP TPTVSKNLDL TADKLLATAA TSAPKASAET ESSQAAAKAS SEADAKARAL
ANIKIGPKGV YTEDSIRVYL QEIGRIRLLR PDEEIELARK IADLLHLEEL AEQFNSDHGH
YPNNKEWAAL VEMPNIKFRR RLMLGRRAKE KMVQSNLRLV VSIAKKYMNR GLSFQDLIQE
GSLGLIRAAE KFDHEKGYKF STYATWWIRQ AITRAIADQS RTIRLPVHLY ETISRIKKTT
KVLSQEFGRK PTEEEIAESM EMTIEKLRFI AKSAQLPISL ETPIGKEEDS RLGDFIESDT
ENPEQDVAKN LLREDLEGVL ATLSPRERDV LRLRYGLDDG RMKTLEEIGQ IFEVTRERIR
QIEAKALRKL RHPNRNGVLK EYIK
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