| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_06301 |
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| Symbol | topA |
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| ID | 4776336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9303 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008820 |
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| Strand | + |
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| Start bp | 593802 |
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| End bp | 596552 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640086137 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001016647 |
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| Protein GI | 124022340 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.059761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTTG CTTGCCGGTG CGATAAAGAT TGGAACGGTT ACATATCGTC TGTGGCGAAC
ACTCTGGTCA TTGTCGAAAG CCCTACCAAG GCGAGAACCA TTCGAGGGTT TCTGCCCAAG
GACTTCCGTG TGGAGGCCTC CATGGGCCAT GTGCGCGACT TGCCCAACAA CGCCAGTGAG
ATCCCTGCGG CCCAGAAGGG GCAGAAATGG GCCAACCTCG GCGTAAACAC CACCGCGGAT
TTCGAACCTC TTTATGTGGT TCCGAAGGAC AAAAAGAAGG TGGTCAAGGA GCTGAAGGCA
GCTTTGAAGG AGGCTGATCA GCTGTTGTTG GCAACTGACG AAGATCGAGA GGGCGAAAGC
ATCAGCTGGC ATTTGCTGCA GCTGTTGGCT CCCAAAGTGC CTGTCAAGCG GATGGTGTTT
CACGAGATCA CCAAAGAAGC CATTGCTAAG GCTCTTGATC AGCCCAGAGA TCTCGACATG
GAGCTGGTCC ATGCCCAGGA AACGCGACGG ATTCTTGACC GTTTGGTGGG ATACACGCTT
TCGCCTCTGT TGTGGAAGAA GGTTGCATGG GGACTCTCCG CCGGTCGGGT GCAGTCAGTT
TCTGTGCGGT TGCTTGTGCA GCGTGAACGT GCCCGTAGGG CTTTCCGTAG CGGCAGCTAC
TGGGACCTAA AGGCCAAACT TGAAAAGGGT GGTGGTCAAT TTGAGGCAAA GCTCACCAGT
CTGGATGGCC AGAAGATTGC TACCGGCAGT GATTTCGATG AAGCGACAGG CGCTTTAAAG
GCTGGCAGAA ATGTTCGACT GCTTGGCGAA TCAGATGCGC TCACTCTTTC CGAGGCCGTG
CGCAGCAGTC AGTGGCGGGT TGAGGCGGTG GAAGAGAAGC CAACGGTACG TAAACCGGTG
CCTCCTTTCA CGACAAGCAC TTTGCAGCAG GAGGCAAATC GCAAGTTGCG GTTTTCGGCC
AGGGAAACGA TGCGGTGTGC CCAGGGGCTT TATGAGCGTG GCTTCATCAC CTATATGCGA
ACTGACTCTG TGCATCTATC CGAGCAGGCT ATTCAGGCTG CTCGGAGCTG CGTGGGGTCA
CGCTATGGCG ATGATTATCT GAGCAAAACT CCACGTCAGT TCAGCACTAA GTCACGCAAT
GCCCAGGAGG CTCACGAAGC GATACGACCA GCGGGTGAAA GCTTCCGTTC CCCAAGTGAA
TCTGGGCTTG AAGGGCGCGA CATGGCCCTA TATGAGTTGA TTTGGAAGCG AACAGTGGCC
AGCCAGATGG CCGAGGCTCG ACTCACCATG CTGGCTGTTG ATCTTCGTGT GGCTGATGCC
AAATTTCGGG CCACGGGTAA GCGCATTGAT TTCCCAGGTT TCTTTCGCGC TTACGTGGAG
GGCAGTGATG ATCCAGACGC TGCCTTGGAA GGCCAGGAAG TTTTGCTGCC TGATTTAGCG
GTTGACGATT CGCCCACGCT GCAGGATGTG GAGGCCCTCG GTCACCAGAC TCAGCCGCCG
GCTCGCTATA GCGAGGCTTC ACTGGTGAAG ATGCTCGAGA AGGAGGGCAT TGGTAGGCCT
TCCACCTACG CCAGCATCAT CGGCACCATC GTTGATCGGG GTTATGCAGC ATTGCAAAAC
AACTCCCTTA TTCCCAGTTT CACTGCTTTT GCTGTAACGG CTCTTCTAGA GGAGCATTTC
CCAGATCTTG TCGATACCAG CTTTACGGCT CGGATGGAAT TCACGCTTGA TGAGATTTCC
ACGGGCAAGG TGCAGTGGTT GCCTTATCTC GAAGGGTTCT ACAAGGGCGA AAAGGGCCTT
GAGAGTCAGG TTCAGCAGCG TGAAGGTGAC ATCGACTCCA GTGTGTCTCG AACTGTGGAT
CTGGAGGGAT TGCCCTGTGT GGTGCGCATC GGTCGTTTTG GGGCCTATCT GGAAGCCAAA
CGAGTGGGTG ATGACGGCGA GGAGGAATCG CTTAAGGCCA CCCTCCCTCA AGAGATCACC
CCTGCTGATC TTGATGCAGA GAAAGCCGAG CTGATTCTCA AGCAGAAAGC TGATGGCCCG
GAATCGATTG GGGAAGACCC GGAAACCGGT GATCAGGTTT ACCTCCTTTT TGGTCAGTAC
GGGCCTTATG TGCAACGAGG CCAGGTGGGT GAGGACAACC CCAAGCCGAA GCGGGCATCC
TTGCCCAAAG GCAAGAAGCC TGATGAGCTC AGCCTTGATG AGGCACTGGG CTTACTGCGT
CTGCCGCGCT TACTGGGAGA GCATCCCGAT GGTGGACGAA TTCAGGCGGG TTTGGGTCGC
TTCGGACCCT ATGTGGTCTG GGATAAGAGC AAGGGAGAGA AGGACTATCG CTCCCTTAAG
GGGGAGGATG ACGTGCTGGC GGTGGGGCTG AGCCGTGCAC TAGAGCTTTT GGCGATGCCC
AAGCGGGGCA GGGGCGGCCG GACTGCGTTG AAAGACCTTG GCATCCCGGA GGGGAGTGAG
GAGACGGTGC AGGTTTTTGA CGGTCCCTAT GGCTTGTATG TCAAGCAGGG CAAGCTCAAT
GCCTCGTTAC CTGAAGGGAA GGGCGTCGAC GACATTTCTC TTGATGTAGC AGTGGAGCTA
TTGGCTGCCA AGGCTTTAAG TAAGAAGACA AGTCGACGCA AAAAGAGCAC TTCAACAACC
AGCAAAAAAC CCGCCGCAAG CAAACCAAAA ACTCCTAAAC CACCTGCTAC TACAAAGACA
GGTCGGTTGC GAGCCAGTGC TGTTCGGGTC ATCAAGCCTG GTGAGGTTTG A
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| Protein sequence | MQLACRCDKD WNGYISSVAN TLVIVESPTK ARTIRGFLPK DFRVEASMGH VRDLPNNASE
IPAAQKGQKW ANLGVNTTAD FEPLYVVPKD KKKVVKELKA ALKEADQLLL ATDEDREGES
ISWHLLQLLA PKVPVKRMVF HEITKEAIAK ALDQPRDLDM ELVHAQETRR ILDRLVGYTL
SPLLWKKVAW GLSAGRVQSV SVRLLVQRER ARRAFRSGSY WDLKAKLEKG GGQFEAKLTS
LDGQKIATGS DFDEATGALK AGRNVRLLGE SDALTLSEAV RSSQWRVEAV EEKPTVRKPV
PPFTTSTLQQ EANRKLRFSA RETMRCAQGL YERGFITYMR TDSVHLSEQA IQAARSCVGS
RYGDDYLSKT PRQFSTKSRN AQEAHEAIRP AGESFRSPSE SGLEGRDMAL YELIWKRTVA
SQMAEARLTM LAVDLRVADA KFRATGKRID FPGFFRAYVE GSDDPDAALE GQEVLLPDLA
VDDSPTLQDV EALGHQTQPP ARYSEASLVK MLEKEGIGRP STYASIIGTI VDRGYAALQN
NSLIPSFTAF AVTALLEEHF PDLVDTSFTA RMEFTLDEIS TGKVQWLPYL EGFYKGEKGL
ESQVQQREGD IDSSVSRTVD LEGLPCVVRI GRFGAYLEAK RVGDDGEEES LKATLPQEIT
PADLDAEKAE LILKQKADGP ESIGEDPETG DQVYLLFGQY GPYVQRGQVG EDNPKPKRAS
LPKGKKPDEL SLDEALGLLR LPRLLGEHPD GGRIQAGLGR FGPYVVWDKS KGEKDYRSLK
GEDDVLAVGL SRALELLAMP KRGRGGRTAL KDLGIPEGSE ETVQVFDGPY GLYVKQGKLN
ASLPEGKGVD DISLDVAVEL LAAKALSKKT SRRKKSTSTT SKKPAASKPK TPKPPATTKT
GRLRASAVRV IKPGEV
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