Gene P9303_04371 details

Gene Information

• Locus tag: P9303_04371
• Symbol: rpoC1
• ID: 4776364
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9303
• Kingdom: Bacteria
• Replicon accession: NC_008820
• Strand: +
• Start bp: 440316
• End bp: 442220
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640085941
• Product: DNA-directed RNA polymerase subunit gamma
• Protein accession: YP_001016454
• Protein GI: 124022147
• COG category: [K] Transcription
• COG ID: [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit
• TIGRFAM ID: [TIGR02387] DNA-directed RNA polymerase, gamma subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACTAACA GCAACCTCCG TACAGAGAAC CACTTCGATT ACGTCAAGAT CACACTTGCT 
TCACCAGACC GGGTGATGGA GTGGGGTCAG CGGACACTTC CTAATGGGCA GGTAGTGGGT 
GAAGTGACGA AGCCGGAGAC GATCAATTAC CGCACCCTTA AGCCTGAGAT GGACGGGCTC 
TTTTGCGAGA AGATCTTCGG CCCTTCAAAG GATTGGGAGT GTCATTGCGG GAAATATAAG 
CGTGTTCGAC ACCGTGGCAT TGTCTGTGAG CGCTGTGGCG TGGAGGTCAC TGAAAGTCGG 
GTCCGGCGTC ATCGCATGGG CTTCATCAAG TTGGCTGCTC CTGTCTCCCA CGTTTGGTAT 
TTGAAAGGGA TACCTAGTTA TGTGGCGATC TTGTTAGATA TGCCTCTACG CGATGTTGAA 
CAGATTGTTT ACTTCAACTG TTATGTCGTG CTCGATCCTG GCGATCATAA GGAACTCAAG 
TATAAGCAGT TACTGACTGA GGATGAGTGG CTAGAGATCG AAGATGAGAT CTATGCGGAA 
GATTCCACGA TTGAGAATGA GCCGATAGTT GGCATCGGGG CTGAAGCCCT AAAGCAATTG 
CTAGAAGATT TGAATTTGGC TGAGGTTGCT GAACAGTTGA GAGAGGATAT TTCCTCTAGC 
AAGGGTCAGA AACGGGCCAA GTTGATTAAG CGTTTGAGAG TGATTGATAA CTTTATTGCC 
ACTAACGCAA GGCCTGAGTG GATGGTGCTG GATGCAATTC CAGTTATTCC TCCAGATTTG 
CGCCCCATGG TGCAATTAGA TGGTGGACGT TTCGCTACAT CCGATCTAAA TGATCTCTAC 
CGTCGGGTGA TTAACCGCAA CAACCGTCTT GCGCGGCTTC AGGAAATCTT GGCTCCTGAG 
ATTATCGTTC GCAATGAGAA GCGGATGCTC CAAGAGGCAG TTGATGCTCT GATCGATAAT 
GGTCGTCGTG GTCGAACTGT TGTTGGTGCT AATAATCGCC CGTTGAAGTC ACTTAGTGAC 
ATCATTGAGG GCAAACAGGG TCGCTTCCGC CAGAACTTGT TAGGTAAGCG GGTCGACTAT 
TCTGGTCGTT CCGTGATCGT GGTGGGCCCC AAGCTGAAGA TGCATCAGTG CGGCTTGCCT 
AAAGAGATGG CAATCGAGCT ATTCCAGCCT TTTGTGATCC ATCGCCTGAT TCGTCAAAAC 
ATTGTCAACA ACATCAAAGC CGCTAAGAAG TTGATCCAGC GAGCTGATGA TGAGGTCATG 
CAGGTGCTGC AGGAGGTCAT TGAGGGGCAC CCGATCCTTT TAAACCGCGC TCCAACTCTG 
CACCGTCTGG GTATACAGGC TTTTGAACCG AAGCTGGTTG CTGGCCGTGC CATTCAGCTT 
CACCCGTTGG TTTGCCCTGC CTTTAACGCC GACTTTGATG GCGACCAAAT GGCTGTTCAT 
GTGCCTTTGG CGATTGAGGC TCAGACGGAA GCGCGAATGT TGATGTTGGC CAGCAACAAC 
ATCCTTTCAC CTGCCACTGG CGATCCGATC ATCACGCCTT CCCAGGACAT GGTGCTTGGC 
TCCTATTACC TAACGGCGAT TAAGCCTGGA GCTTCTGTTC CTGAGTTTGG CGATCAATCC 
AGAACCTATG CTGGTTTAGA GGACGTCATC CATGCGTTTG AAGATAAAAG ACTCCTACTG 
CATGACTGGG TTTGGGTTCG CTTCAACGGT GAGGTAGAGG ATGAAGATGA AATTGACAAA 
CCTCTCAAGG CTGAATCACT TAGTGATGGC ACTCGCATTG AGCAGTGGAC TTATCGCCGA 
GATCGTTTCG ACGAAGACGG AGCATTGATC AGTCGCTACA TCCTTACAAC AGTGGGACGC 
GTGGTGATGA ATTACACAAT TATCGATGCG GTGGCCGCCG CCTGA 

 

Protein sequence

MTNSNLRTEN HFDYVKITLA SPDRVMEWGQ RTLPNGQVVG EVTKPETINY RTLKPEMDGL 
FCEKIFGPSK DWECHCGKYK RVRHRGIVCE RCGVEVTESR VRRHRMGFIK LAAPVSHVWY 
LKGIPSYVAI LLDMPLRDVE QIVYFNCYVV LDPGDHKELK YKQLLTEDEW LEIEDEIYAE 
DSTIENEPIV GIGAEALKQL LEDLNLAEVA EQLREDISSS KGQKRAKLIK RLRVIDNFIA 
TNARPEWMVL DAIPVIPPDL RPMVQLDGGR FATSDLNDLY RRVINRNNRL ARLQEILAPE 
IIVRNEKRML QEAVDALIDN GRRGRTVVGA NNRPLKSLSD IIEGKQGRFR QNLLGKRVDY 
SGRSVIVVGP KLKMHQCGLP KEMAIELFQP FVIHRLIRQN IVNNIKAAKK LIQRADDEVM 
QVLQEVIEGH PILLNRAPTL HRLGIQAFEP KLVAGRAIQL HPLVCPAFNA DFDGDQMAVH 
VPLAIEAQTE ARMLMLASNN ILSPATGDPI ITPSQDMVLG SYYLTAIKPG ASVPEFGDQS 
RTYAGLEDVI HAFEDKRLLL HDWVWVRFNG EVEDEDEIDK PLKAESLSDG TRIEQWTYRR 
DRFDEDGALI SRYILTTVGR VVMNYTIIDA VAAA