Gene P9303_04361 details

Gene Information

• Locus tag: P9303_04361
• Symbol: rpoB
• ID: 4776363
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9303
• Kingdom: Bacteria
• Replicon accession: NC_008820
• Strand: +
• Start bp: 436973
• End bp: 440266
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640085940
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001016453
• Protein GI: 124022146
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCAGCA GCGCGATTCA GGTCGCAAAG ACCGCCACCT ACCTGCCTGA TCTCGTTGAA 
GTTCAGCGGG CGAGCTTCAA GTGGTTTCTT GATGAGGGCT TGATCGAGGA GTTGGATAGC 
TTTTCTCCGA TCACTGACTA CACAGGCAAG CTTGAACTCC ACTTCGTTGG CAATGAATAC 
CGATTGAAGC GGCCTCGCCA CGATGTTGAA GAGGCCAAGC GCCGTGATGC GACTTTTGCT 
TCACAGATGT ATGTGACCTG TCGCTTAGTG AATAAGGAAA CAGGTGAGAT TAAAGAGCAG 
GAGGTATTTA TTGGCGAGCT TCCTCTGATG ACTGAGCGAG GTACGTTCAT TATCAATGGT 
GCAGAGAGGG TTATTGTTAA TCAGATTGTG CGTAGCCCAG GGGTATATTT TAAGGATGAA 
CAGGATAAGA ATGGACGACG AACATACAAT GCCAGTGTTA TTCCTAATCG TGGTGCCTGG 
CTAAAGTTCG AAACAGATAA AAACGACCTT CTGCATGTGC GTGTTGATAA AACACGCAAA 
ATTAATGCCC ATGTTTTAAT GCGGGCCATG GGGCTATCAG ATAACGATGT AATCGATAAG 
CTTCGTCACC CTGAGTATTA TAAGAAGTCT ATTGAGGCTG CAAATGAGGA AGGAATTAGT 
TCAGAGGATC AGGCTTTGCT TGAGCTTTAT AAAAAGCTTC GTCCTGGTGA GCCTCCTTCA 
GTAAGCGGTG GACAACAGCT TCTGCAGACC CGATTTTTTG ATCCCAAGCG TTATGACCTT 
GGCCGAGTTG GCCGTTACAA GATTAATAAA AAGCTGCGTC TAACAATCCC GGATACGGTG 
CGTACCCTCA CCCATGAGGA TGTGCTCTCA ACCCTTGATT ATCTGATCAA TTTAGAACTC 
GATGTGGGTG GTGCCAGCCT GGATGACATT GATCACCTGG GCAATCGTCG AGTGCGTTCA 
GTGGGTGAAC TTTTGCAGAA CCAGGTCCGG GTTGGTCTCA ATCGCCTGGA GAGGATCATC 
AAAGAACGGA TGACTGTGGG TGAGACCGAT TCGCTCACGC CAGCTCAGTT GGTGAACCCC 
AAGCCTCTCG TTGCAGCTGT TAAGGAGTTC TTCGGTTCCA GTCAGCTGAG TCAGTTCATG 
GATCAGACGA ATCCATTGGC TGAGCTCACC CACAAACGTC GTATCTCAGC TCTGGGGCCA 
GGGGGCCTAA CTAGGGAGCG TGCTGGCTTC GCGGTGCGTG ATATTCACCC CTCCCATTAT 
GGCCGTCTCT GCCCAATTGA GACACCGGAA GGCCCGAATG CAGGTTTGAT CAATTCACTG 
GCTACCCACG CTCGGGTCAA TCAGTATGGC TTCATTGAGA CTCCTTTCTG GAAAGTTGAG 
AACGGTCGCC TGATCAAGGA GGGAGACCCC ATCTATTTAT CAGCCGATCT TGAGGATGAG 
TGTCGTGTGG CTCCTGGTGA TGTGGCCACT GATGCCGATG GACAGATTCT CGCTGAATTA 
ATTCCGGTGC GTTATCGCCA GGACTTCGAA AAAGTTCCAC CTGAGCAGGT GGATTATGTG 
CAGCTCTCGC CGGTGCAGGT GATCTCTGTC GCCACCTCCT TGATTCCTTT CCTCGAGCAC 
GATGACGCCA ATAGGGCTCT GATGGGATCA AATATGCAAC GGCAGGCGGT ACCACTGTTG 
CGGCCTGAGC GGCCTTTGGT GGGGACGGGC CTCGAAACTC AGGTGGCTCG TGATTCCGGG 
ATGGTGCCCA TCTCCCGTGT TAATGGCATG GTCACATTCG TGGATGCCAC TGCGATCATC 
GTCCGGGATG AGGATGGGGT TGATCACACC CACTACCTGC AGAAGTATCA GCGTTCAAAT 
CAGGACACCT GTCTCAATCA GCGTCCGATT GTCTGCCAGG GTGATCCGGT GATCGTGGGT 
CAGGTTCTTG CGGATGGTTC TGCTTGTGAA GGCGGTGAAA TTGCTCTAGG TCAGAACGTT 
TTGGTCGCTT ATATGCCTTG GGAGGGTTAC AACTACGAGG ATGCTATTCT TGTCAGCGAA 
CGCCTAGTTA AGGACGACCT CTACACCTCG GTGCATATCG AGAAGTATGA GATCGAGGCA 
CGACAGACAA AGCTTGGTCC CGAGGAGATC ACCAGGGAGA TACCCAATGT TGCCGAGGAA 
AGCCTTGGCA ATCTTGATGA AATGGGCATC ATTCGCATCG GTGCTTTTGT CGAGAGCGGC 
GACATTCTGG TGGGCAAAGT GACACCTAAA GGTGAGTCAG ATCAGCCTCC AGAAGAGAAG 
CTTTTGCGTG CCATTTTTGG TGAAAAAGCG CGCGATGTGC GTGATAACTC TCTACGCGTT 
CCCAGTACTG AACGAGGACG AGTTGTGGAC GTTCGTATTT ACACTCGTGA ACAGGGTGAT 
GAGCTTCCCC CTGGCGCCAA TATGGTTGCT CGAGTGTATG TGGCTCAGCG TCGCAAGATC 
CAGGTTGGCG ACAAGATGGC CGGTCGCCAC GGCAATAAAG GCATCATCAG TCGCATTCTT 
CCCCGCGAAG ATATGCCTTT TCTGCCCGAT GGCACTCCAG TTGACATCGT TTTGAATCCT 
TTGGGCGTGC CCAGCCGGAT GAATGTGGGT CAGGTGTTTG AGTGCTTAAT GGGATGGGCC 
GCAGCCAATC TCGACTGTCG GGTCAAGGTG GTGCCTTTTG ATGAAATGTA TGGAGCTGAA 
AAGTCCCAGC AGACAGTGGA GGCTTATCTC AAGGAAGCTG CCAAACAGCC AGGTAAGGAG 
TGGGTCTACA ACCCTGAAAA TCCTGGCAAG CTTCAATTGA TTGATGGACG CTCGGGTGAA 
CCTTTCGACC AGCCGGTGAC CGTTGGTTAT GCACAGATTC TGAAGCTTGT TCATTTGGTT 
GATGACAAGA TCCATGCTCG CTCAACAGGT CCCTATTCAC TGGTAACCCA GCAACCTCTT 
GGCGGTAAGG CTCAACAAGG TGGCCAACGT TTAGGTGAGA TGGAGGTGTG GGCTCTTGAG 
GCCTATGGCG CCGCTTACAC CCTGCAGGAG CTGCTTACTG TTAAATCAGA CGATATGCAG 
GGTCGGAATG AAGCCCTCAA CGCAATCGTC AAGGGCAAGC CTATCCCCAG GCCGGGGACA 
CCCGAGTCTT TCAAGGTATT GATGCGTGAG CTTCAGTCTC TAGGGCTCGA TATCGCTGTT 
TATACCGATG AAGGCAAAGA AGTGGATCTG ATGCAGGATG TGAATCCTCG CCGTAGTACT 
CCTAGTCGAC CCACTTACGA ATCCCTTGGA GTAGCGGATT ACGACGAAGA TTAA 

 

Protein sequence

MSSSAIQVAK TATYLPDLVE VQRASFKWFL DEGLIEELDS FSPITDYTGK LELHFVGNEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE QDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVIDK LRHPEYYKKS IEAANEEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQT RFFDPKRYDL GRVGRYKINK KLRLTIPDTV RTLTHEDVLS TLDYLINLEL 
DVGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAVKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNQYG FIETPFWKVE NGRLIKEGDP IYLSADLEDE 
CRVAPGDVAT DADGQILAEL IPVRYRQDFE KVPPEQVDYV QLSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LETQVARDSG MVPISRVNGM VTFVDATAII 
VRDEDGVDHT HYLQKYQRSN QDTCLNQRPI VCQGDPVIVG QVLADGSACE GGEIALGQNV 
LVAYMPWEGY NYEDAILVSE RLVKDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVAEE 
SLGNLDEMGI IRIGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PSTERGRVVD VRIYTREQGD ELPPGANMVA RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPFLPD GTPVDIVLNP LGVPSRMNVG QVFECLMGWA AANLDCRVKV VPFDEMYGAE 
KSQQTVEAYL KEAAKQPGKE WVYNPENPGK LQLIDGRSGE PFDQPVTVGY AQILKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIAV YTDEGKEVDL MQDVNPRRST 
PSRPTYESLG VADYDED