Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | P9303_02671 |
Symbol | |
ID | 4778477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9303 |
Kingdom | Bacteria |
Replicon accession | NC_008820 |
Strand | + |
Start bp | 279449 |
End bp | 282886 |
Gene Length | 3438 bp |
Protein Length | 1145 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640085771 |
Product | RND family multidrug efflux transporter |
Protein accession | YP_001016287 |
Protein GI | 124021980 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.440659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCAT CAAATAACTT TATTACGCGA CCTGTTTTAG CAACAGTTTG CAGTTTGTTG ATCGTCATTG CGGGACTGAT ATCTATCCCT ATTTTGCCAG TTGAAATGCT TCCGGATATT GCTCCGCCAA CAGTAAAAGT AAATTCAATT TACACCGGTG CCGATGCTGA ATCGGTTGAG CAGGGTGTGA CCAGTGTGCT GGAGCAGCAG ATTAATGGGG TGGAGAATAT GGACTATTTA ACTTCCTCAA GCTCGGCTGA TGGGGTGAGC TCGATTGCTG TTGCGTTCGA AAGTGGTAGT AATAGCGATA TTAATCAAGT TAATGTTCAG AACAGGGTTG CGCTGGCAGA GCCACAGTTG CCGGAAGAAG TGCGTAAGGC AGGGGTGAGT GTTAATAAGG CTTCCAATTC TATCTTGCTT CTTTATAATT TTGTTAGTGA AGATCCAAGC AATATTGAAT ATAGTGTAGA AACGATTAGT GGGCTGCTAG ATCTGGGTCT AACGGACGAG GTTAAGCGGG TTAAGGGAGT AGGTGAAGTG ACCTACTTTG GTAATCGTAA GGTTGCTTTT AGGCTTTGGC TGGACAATGA AAAGCTTGAG GTTTTTGGCC TGACTTCAGC GGATGTAATG GGGGCGATTG AAAGCCAGAA CCGTTTGGTT CCTGCTGGGA GTATAGGAGG TGAACCATCT GCAGAAGGGC AGATATTTAC TTTTCCTGTT CAATTAAATG GCCGCCTTGT GAGCATTGGA GACTTTGAAA ATATGGTCGT TAGGACCACA GATGATGGTG GATTAGTGAG GTTTAGTGAT GTCGGTCGTG TTGTGCTTGG TGGTGAAAGC TATTCCAACA GCGCTACGGA TTTGCAGGCA GTCCCTTCTG TGAGTATGGC TGTTTATCAA TTGAGTGGCA GCAATGCTCT TGAGGTTTCT AATGGAGTAA AAGATGTTCT CGAAGAATTT ACCGCCAAAA TGCCTGTCGG CATGAAGATG GAGAAAATCT ATGACAATAC AGATTTTATT AATGCATCAA TTAATGGAGT GACCAATTCG CTTAGAGATT CGATCATTTT GGTGGTTCTT ATTCTGTTTG TATTTTTACA GAATTGGAAA GCTACTTTGG TGCCTGGTAT TGCCATCCCT GTTGCGCTTG TTGGAACATT CTCTCTGGTT TTAGGGTTTG GCTTCTCGCT CAACCAGCTC ACTTTATTTG GATTGGTTCT TGCTACAGGA TTAGTGGTTG ATGATGCAAT CACAGTGATT GAAGATACCT CAACCAAGAA AGCATCAGGG ATGACTGCCT TGGAAGCTGC GAAGTCAACA ATGGATGAGC TTTTCTCTGC AGTTATTGCT ACATCCTTGG TTCTTTTCTC AGTTTTTTTG CCAGTGTTGT TTTTCCCTGG CGCTACGGGT TCGATCTACA AGCAGTTTGC AGCAACGATT ATTTTCGCGA TCGCGATTTC TACCTTTAAT GCTTTAACTT TTTCTCCCAT GCTTTCTGCC TTGCTTTTGG GCCGGGAAGG CACAGCTCCG GGACGCAATA CATATGCAAT TTCTGGTGCA GTCATTGGGT TTATATACGG ACTATTAGTT GTTGGTGGTG GTGCGGCGCT GGCCTTGATC CCTACAGCAA TGGCTGCAAT TCTTGGCTTT GTGCTGTCTA GCTTGACTGG CCGTTCGTTG AGGCTGCCAT TCTCTGTTGC AGGGGCTGTG ATTGGCCTTT TCATCGCAGG AGTGTCAAAT CCCTTGCCAG TCGTTTTATT CGCTGGCCTT GGCTTGACCT TGGGTTGGTT TACACCATGG ATTTTCAGTC ATTTCAATCG CATTTATTCC GTCTTTGAGC AGCGCTATGC CGATCTGCTC GAGTGGGTTC TTGGCCGCCG TTCTCTTGTG ATGGGAATTC TTGCGGTAGG CGTTCTGCTT ACCGGGGTTG CTTTTACTGC GATTCCAGGT GGATTTGTGC CTACTGAAGA CCAGGGCTAT GCCATCGGCG TGTTGCAGGC CCCAGAAGGT GTGTCTACTC AGGTCACCGA GAAGATTAAT AAGCAAGTTG CTGAGATATT GCGCAGCGAA CCCGATATCA CTTCAGCAGC AATTTTCAGT GGAGCAAGTT TTGATGGCAA TAGCCCTAAT AAAGGATTGT TTTTTATTGG GATGCGTAAT TGGGATGAGC GCAAAAAGCG TGATCAATCT GCTGATGCAA TTGTTGGACG GCTAAATCAG AAGTTCTTTG GGGCTATTGA TGGCGCGAGG ATTTTTGTTG TAGAGCCACC TGCGATTCCT GGATACGGCA TTGGCAGTGG ATTTGAGTTC CAGTTACTTG ATAAGAGTGG AGGTGCTTAT GGCTTAAACA ACTTCTTTGC CTCAGCTGGT CAAATGATTC AGCAGGCGAA TGCAAATCCA TTGTTGAGCA GTGTACGGAC TTTATTCTCT CCTGAATCTC CGCAGCTACG AGTTGAGGTC GATAGGGACA TTATGGCCTC TCTTGATATT GACTTCAGCT CTGCAATGCG TGTGTTTAGC GCTAATTTTG CAGGCGCCTA TGTTAATGAT ACCTTCCAGG AAGGTAAGGT TCGTCGTGTT TATGTTCAGG CCGATGAATT GGGTCGGTCT GCTCCTCAAA AGCTAGCTTC AATTTACGTT AATAATCGGG CGGGTGAGCA GATTCAGCTC TCGGAATTTT TAACAGTTGA ACCTTCAGTT GGGCCAAGTG TGATCTCTCA CTTTAACCTT TACAGATCGA TAAAAATAGA AGGGTCACCT GCTGCTGGTA AGAGCTCGGG GCAGGCAATT AATGGTATGA AGGAGCTTTT TGCAGCTCAG AATCTTAACA GCCTCGGATT TGATTGGACA GGGATATCTC GAGAGGAAGT AAAAGCTGGT GCACTAGCTG TTGTGATTTT TGCACTGGGA ATTTTGGTGG TTTATCTCGT GCTTGCAGCT CAATACGAGA GTTATGCAGA CCCTCTGATT ATTTTGATGA CAGTTCCTAC TGCAATGCTT GGAGCCTTGT TGTTTCTGGC ATTGCGTGGC GAGGTTCTCA ACATTTATGC ACAGGTTGGC CTTGTGATGT TGATTGGTCT AGCTGCCAAA AATGGGATCT TGATTGTTGA TTTGGCTAAT CAACGCATGG CGGAGGGAGT TACGGCCCTT GAAGCAGCAA GGCAGGCAGC CAAGTCGAGA CTTAGGCCCA TCATTATGAC TGCTATTTCG TCTCTTTTTG GCTTTATGCC GTTGGTCTTG GCTAGCGGAG CAGGAGCCCG CAGCCAAGCT TCTCTTGGCA CGGTTGTATT CGGTGGCCTT TTAGTTGCCA CTTTCCTTTC GCTGTTTGTT GTGCCTGTCT TTTACGTCGT TGTTAAAGCT CTTGTAGGCA CCTTTAGTGA TACAGAACAA GGCAACACTA ATTTACTTAA TTCGGGAGAA CCCTCTGGGC AGGGATAA
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Protein sequence | MSASNNFITR PVLATVCSLL IVIAGLISIP ILPVEMLPDI APPTVKVNSI YTGADAESVE QGVTSVLEQQ INGVENMDYL TSSSSADGVS SIAVAFESGS NSDINQVNVQ NRVALAEPQL PEEVRKAGVS VNKASNSILL LYNFVSEDPS NIEYSVETIS GLLDLGLTDE VKRVKGVGEV TYFGNRKVAF RLWLDNEKLE VFGLTSADVM GAIESQNRLV PAGSIGGEPS AEGQIFTFPV QLNGRLVSIG DFENMVVRTT DDGGLVRFSD VGRVVLGGES YSNSATDLQA VPSVSMAVYQ LSGSNALEVS NGVKDVLEEF TAKMPVGMKM EKIYDNTDFI NASINGVTNS LRDSIILVVL ILFVFLQNWK ATLVPGIAIP VALVGTFSLV LGFGFSLNQL TLFGLVLATG LVVDDAITVI EDTSTKKASG MTALEAAKST MDELFSAVIA TSLVLFSVFL PVLFFPGATG SIYKQFAATI IFAIAISTFN ALTFSPMLSA LLLGREGTAP GRNTYAISGA VIGFIYGLLV VGGGAALALI PTAMAAILGF VLSSLTGRSL RLPFSVAGAV IGLFIAGVSN PLPVVLFAGL GLTLGWFTPW IFSHFNRIYS VFEQRYADLL EWVLGRRSLV MGILAVGVLL TGVAFTAIPG GFVPTEDQGY AIGVLQAPEG VSTQVTEKIN KQVAEILRSE PDITSAAIFS GASFDGNSPN KGLFFIGMRN WDERKKRDQS ADAIVGRLNQ KFFGAIDGAR IFVVEPPAIP GYGIGSGFEF QLLDKSGGAY GLNNFFASAG QMIQQANANP LLSSVRTLFS PESPQLRVEV DRDIMASLDI DFSSAMRVFS ANFAGAYVND TFQEGKVRRV YVQADELGRS APQKLASIYV NNRAGEQIQL SEFLTVEPSV GPSVISHFNL YRSIKIEGSP AAGKSSGQAI NGMKELFAAQ NLNSLGFDWT GISREEVKAG ALAVVIFALG ILVVYLVLAA QYESYADPLI ILMTVPTAML GALLFLALRG EVLNIYAQVG LVMLIGLAAK NGILIVDLAN QRMAEGVTAL EAARQAAKSR LRPIIMTAIS SLFGFMPLVL ASGAGARSQA SLGTVVFGGL LVATFLSLFV VPVFYVVVKA LVGTFSDTEQ GNTNLLNSGE PSGQG
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