Gene P9303_02671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9303_02671 
Symbol 
ID4778477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9303 
KingdomBacteria 
Replicon accessionNC_008820 
Strand
Start bp279449 
End bp282886 
Gene Length3438 bp 
Protein Length1145 aa 
Translation table11 
GC content46% 
IMG OID640085771 
ProductRND family multidrug efflux transporter 
Protein accessionYP_001016287 
Protein GI124021980 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.440659 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCAT CAAATAACTT TATTACGCGA CCTGTTTTAG CAACAGTTTG CAGTTTGTTG 
ATCGTCATTG CGGGACTGAT ATCTATCCCT ATTTTGCCAG TTGAAATGCT TCCGGATATT
GCTCCGCCAA CAGTAAAAGT AAATTCAATT TACACCGGTG CCGATGCTGA ATCGGTTGAG
CAGGGTGTGA CCAGTGTGCT GGAGCAGCAG ATTAATGGGG TGGAGAATAT GGACTATTTA
ACTTCCTCAA GCTCGGCTGA TGGGGTGAGC TCGATTGCTG TTGCGTTCGA AAGTGGTAGT
AATAGCGATA TTAATCAAGT TAATGTTCAG AACAGGGTTG CGCTGGCAGA GCCACAGTTG
CCGGAAGAAG TGCGTAAGGC AGGGGTGAGT GTTAATAAGG CTTCCAATTC TATCTTGCTT
CTTTATAATT TTGTTAGTGA AGATCCAAGC AATATTGAAT ATAGTGTAGA AACGATTAGT
GGGCTGCTAG ATCTGGGTCT AACGGACGAG GTTAAGCGGG TTAAGGGAGT AGGTGAAGTG
ACCTACTTTG GTAATCGTAA GGTTGCTTTT AGGCTTTGGC TGGACAATGA AAAGCTTGAG
GTTTTTGGCC TGACTTCAGC GGATGTAATG GGGGCGATTG AAAGCCAGAA CCGTTTGGTT
CCTGCTGGGA GTATAGGAGG TGAACCATCT GCAGAAGGGC AGATATTTAC TTTTCCTGTT
CAATTAAATG GCCGCCTTGT GAGCATTGGA GACTTTGAAA ATATGGTCGT TAGGACCACA
GATGATGGTG GATTAGTGAG GTTTAGTGAT GTCGGTCGTG TTGTGCTTGG TGGTGAAAGC
TATTCCAACA GCGCTACGGA TTTGCAGGCA GTCCCTTCTG TGAGTATGGC TGTTTATCAA
TTGAGTGGCA GCAATGCTCT TGAGGTTTCT AATGGAGTAA AAGATGTTCT CGAAGAATTT
ACCGCCAAAA TGCCTGTCGG CATGAAGATG GAGAAAATCT ATGACAATAC AGATTTTATT
AATGCATCAA TTAATGGAGT GACCAATTCG CTTAGAGATT CGATCATTTT GGTGGTTCTT
ATTCTGTTTG TATTTTTACA GAATTGGAAA GCTACTTTGG TGCCTGGTAT TGCCATCCCT
GTTGCGCTTG TTGGAACATT CTCTCTGGTT TTAGGGTTTG GCTTCTCGCT CAACCAGCTC
ACTTTATTTG GATTGGTTCT TGCTACAGGA TTAGTGGTTG ATGATGCAAT CACAGTGATT
GAAGATACCT CAACCAAGAA AGCATCAGGG ATGACTGCCT TGGAAGCTGC GAAGTCAACA
ATGGATGAGC TTTTCTCTGC AGTTATTGCT ACATCCTTGG TTCTTTTCTC AGTTTTTTTG
CCAGTGTTGT TTTTCCCTGG CGCTACGGGT TCGATCTACA AGCAGTTTGC AGCAACGATT
ATTTTCGCGA TCGCGATTTC TACCTTTAAT GCTTTAACTT TTTCTCCCAT GCTTTCTGCC
TTGCTTTTGG GCCGGGAAGG CACAGCTCCG GGACGCAATA CATATGCAAT TTCTGGTGCA
GTCATTGGGT TTATATACGG ACTATTAGTT GTTGGTGGTG GTGCGGCGCT GGCCTTGATC
CCTACAGCAA TGGCTGCAAT TCTTGGCTTT GTGCTGTCTA GCTTGACTGG CCGTTCGTTG
AGGCTGCCAT TCTCTGTTGC AGGGGCTGTG ATTGGCCTTT TCATCGCAGG AGTGTCAAAT
CCCTTGCCAG TCGTTTTATT CGCTGGCCTT GGCTTGACCT TGGGTTGGTT TACACCATGG
ATTTTCAGTC ATTTCAATCG CATTTATTCC GTCTTTGAGC AGCGCTATGC CGATCTGCTC
GAGTGGGTTC TTGGCCGCCG TTCTCTTGTG ATGGGAATTC TTGCGGTAGG CGTTCTGCTT
ACCGGGGTTG CTTTTACTGC GATTCCAGGT GGATTTGTGC CTACTGAAGA CCAGGGCTAT
GCCATCGGCG TGTTGCAGGC CCCAGAAGGT GTGTCTACTC AGGTCACCGA GAAGATTAAT
AAGCAAGTTG CTGAGATATT GCGCAGCGAA CCCGATATCA CTTCAGCAGC AATTTTCAGT
GGAGCAAGTT TTGATGGCAA TAGCCCTAAT AAAGGATTGT TTTTTATTGG GATGCGTAAT
TGGGATGAGC GCAAAAAGCG TGATCAATCT GCTGATGCAA TTGTTGGACG GCTAAATCAG
AAGTTCTTTG GGGCTATTGA TGGCGCGAGG ATTTTTGTTG TAGAGCCACC TGCGATTCCT
GGATACGGCA TTGGCAGTGG ATTTGAGTTC CAGTTACTTG ATAAGAGTGG AGGTGCTTAT
GGCTTAAACA ACTTCTTTGC CTCAGCTGGT CAAATGATTC AGCAGGCGAA TGCAAATCCA
TTGTTGAGCA GTGTACGGAC TTTATTCTCT CCTGAATCTC CGCAGCTACG AGTTGAGGTC
GATAGGGACA TTATGGCCTC TCTTGATATT GACTTCAGCT CTGCAATGCG TGTGTTTAGC
GCTAATTTTG CAGGCGCCTA TGTTAATGAT ACCTTCCAGG AAGGTAAGGT TCGTCGTGTT
TATGTTCAGG CCGATGAATT GGGTCGGTCT GCTCCTCAAA AGCTAGCTTC AATTTACGTT
AATAATCGGG CGGGTGAGCA GATTCAGCTC TCGGAATTTT TAACAGTTGA ACCTTCAGTT
GGGCCAAGTG TGATCTCTCA CTTTAACCTT TACAGATCGA TAAAAATAGA AGGGTCACCT
GCTGCTGGTA AGAGCTCGGG GCAGGCAATT AATGGTATGA AGGAGCTTTT TGCAGCTCAG
AATCTTAACA GCCTCGGATT TGATTGGACA GGGATATCTC GAGAGGAAGT AAAAGCTGGT
GCACTAGCTG TTGTGATTTT TGCACTGGGA ATTTTGGTGG TTTATCTCGT GCTTGCAGCT
CAATACGAGA GTTATGCAGA CCCTCTGATT ATTTTGATGA CAGTTCCTAC TGCAATGCTT
GGAGCCTTGT TGTTTCTGGC ATTGCGTGGC GAGGTTCTCA ACATTTATGC ACAGGTTGGC
CTTGTGATGT TGATTGGTCT AGCTGCCAAA AATGGGATCT TGATTGTTGA TTTGGCTAAT
CAACGCATGG CGGAGGGAGT TACGGCCCTT GAAGCAGCAA GGCAGGCAGC CAAGTCGAGA
CTTAGGCCCA TCATTATGAC TGCTATTTCG TCTCTTTTTG GCTTTATGCC GTTGGTCTTG
GCTAGCGGAG CAGGAGCCCG CAGCCAAGCT TCTCTTGGCA CGGTTGTATT CGGTGGCCTT
TTAGTTGCCA CTTTCCTTTC GCTGTTTGTT GTGCCTGTCT TTTACGTCGT TGTTAAAGCT
CTTGTAGGCA CCTTTAGTGA TACAGAACAA GGCAACACTA ATTTACTTAA TTCGGGAGAA
CCCTCTGGGC AGGGATAA
 
Protein sequence
MSASNNFITR PVLATVCSLL IVIAGLISIP ILPVEMLPDI APPTVKVNSI YTGADAESVE 
QGVTSVLEQQ INGVENMDYL TSSSSADGVS SIAVAFESGS NSDINQVNVQ NRVALAEPQL
PEEVRKAGVS VNKASNSILL LYNFVSEDPS NIEYSVETIS GLLDLGLTDE VKRVKGVGEV
TYFGNRKVAF RLWLDNEKLE VFGLTSADVM GAIESQNRLV PAGSIGGEPS AEGQIFTFPV
QLNGRLVSIG DFENMVVRTT DDGGLVRFSD VGRVVLGGES YSNSATDLQA VPSVSMAVYQ
LSGSNALEVS NGVKDVLEEF TAKMPVGMKM EKIYDNTDFI NASINGVTNS LRDSIILVVL
ILFVFLQNWK ATLVPGIAIP VALVGTFSLV LGFGFSLNQL TLFGLVLATG LVVDDAITVI
EDTSTKKASG MTALEAAKST MDELFSAVIA TSLVLFSVFL PVLFFPGATG SIYKQFAATI
IFAIAISTFN ALTFSPMLSA LLLGREGTAP GRNTYAISGA VIGFIYGLLV VGGGAALALI
PTAMAAILGF VLSSLTGRSL RLPFSVAGAV IGLFIAGVSN PLPVVLFAGL GLTLGWFTPW
IFSHFNRIYS VFEQRYADLL EWVLGRRSLV MGILAVGVLL TGVAFTAIPG GFVPTEDQGY
AIGVLQAPEG VSTQVTEKIN KQVAEILRSE PDITSAAIFS GASFDGNSPN KGLFFIGMRN
WDERKKRDQS ADAIVGRLNQ KFFGAIDGAR IFVVEPPAIP GYGIGSGFEF QLLDKSGGAY
GLNNFFASAG QMIQQANANP LLSSVRTLFS PESPQLRVEV DRDIMASLDI DFSSAMRVFS
ANFAGAYVND TFQEGKVRRV YVQADELGRS APQKLASIYV NNRAGEQIQL SEFLTVEPSV
GPSVISHFNL YRSIKIEGSP AAGKSSGQAI NGMKELFAAQ NLNSLGFDWT GISREEVKAG
ALAVVIFALG ILVVYLVLAA QYESYADPLI ILMTVPTAML GALLFLALRG EVLNIYAQVG
LVMLIGLAAK NGILIVDLAN QRMAEGVTAL EAARQAAKSR LRPIIMTAIS SLFGFMPLVL
ASGAGARSQA SLGTVVFGGL LVATFLSLFV VPVFYVVVKA LVGTFSDTEQ GNTNLLNSGE
PSGQG