Gene P9303_00111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9303_00111 
SymbolrsbU 
ID4776076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9303 
KingdomBacteria 
Replicon accessionNC_008820 
Strand
Start bp14295 
End bp15698 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content53% 
IMG OID640085510 
Productprotein phosphatase 2C domain-containing protein 
Protein accessionYP_001016033 
Protein GI124021726 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCAGTA AGCCGCCACG GCGACATCAG ACTCCTTCTT TTCGTAGCGC TTCTCAGCAG 
GTGTCAGCCT CTACGTCGTT GCGGCAATTG CTTGATAGCT TGTCGAGGGA GCAGCGCCGA
AATCAGGACT TGTTGGTTTC GTTGGGTTTT GCCCTGCGCA GTTTCACCAA TCTGCATCGT
TTTCTCGAAT TGGTCCCTGT GGTGGCCTCC CGCCTGGTGG GCGTACAAGG AGCATTGCTT
GTGCCTTTTC AGGTTGATGG TCGTTTGTGG AGAGAGCAGC TTCAGGCAGT GCCATTTGAT
CAGAGTCAGG AATTAGTGAG GCAGTTGGCT TCATTTGAAG CAGGTTTTGC CACAGGTTTC
GGCACTGATG AGGCACAGGT TCTTGCTATG GATCAGTTGG TTCAGCGCCA TTTGGCTAGG
GCCGGGATGT TTGCCACCTC ATTAGTTGCT CGCGGGCAGC AGCGTGGCAG GCTTTATGTT
TTTGATCCTC AAGCAGCTCT GATTTGGAGT GATGTTCACC GTCGCCATGT GCAGTTGGTG
GCTGACCTTA CTGGGGTGGC TATTGAGAAC GATCTGATGC TTCAGGAGGC TCGTCTTCAC
GAGCGGGTGG ACCGTCAACT CAGTATCGGG GCAGAGATTC AGGCTCAGCT CTTGCCAGAT
CGTTGTCCTG TGATTGAAGG TGTCGAGCTT GCGGCTCGTT GCCGTCCCGC CTTTCAGGTC
GGCGGCGATT ATTACGATTT CATCCCTACC CGTCCAGAAC TGATCGGTCG ACGCAAGGAA
CGAGGTCGTT GGGGTCTTGT GATGGGAGAT GTGATGGGTA AGGGTGTACC TGCTGGTTTA
TTAATGACCA TGCTCAGGGG CATGTTGCGT GCAGAGGTGT TAAGTGGTCT GCCGCCCAAT
CGGATTCTCC ATGATCTCAA TCAGCTAGCT CAAGAGGACT TGGCTCAGTC CCATAGGTTT
GTGACTCTTT TTTATTCTGA CTACGATCCG CGCACGCGTC GTCTTCGCTA TGCAAATGCT
GCTCATAATC CTCCTCTGAT CTGGCGAGCT GAGCAACGCA GTGTGAGTCG GCTTGATGTG
CCTGGTTTGT TGATTGGACT TCAGCCAGAG GCGGATTACA GCTGTGGTGA AATTTTGCTC
AAGCCTGGTG ACGTGATTAT TTACTACACA GACGGTGTTA CCGAAGCTTC TGGCATCACC
GGAGATCGTT TTGATGAAGC TCGCTTGATT CGCACAATGG AGGGATCTTG TCGAAGTGGT
TTAGGCGCAC AGGGGATTCT TGATCAGTTA TTTGCTCGTT TGGATCGGTT TGTCGGTGTG
GACCATCAAC TGGAAGATGA TGCCTCAATG GTGGTTTTGA AAGTGCCAGA GGAGGTAACG
CTGCCTTCTG TGTCCCTGGC CTGA
 
Protein sequence
MSSKPPRRHQ TPSFRSASQQ VSASTSLRQL LDSLSREQRR NQDLLVSLGF ALRSFTNLHR 
FLELVPVVAS RLVGVQGALL VPFQVDGRLW REQLQAVPFD QSQELVRQLA SFEAGFATGF
GTDEAQVLAM DQLVQRHLAR AGMFATSLVA RGQQRGRLYV FDPQAALIWS DVHRRHVQLV
ADLTGVAIEN DLMLQEARLH ERVDRQLSIG AEIQAQLLPD RCPVIEGVEL AARCRPAFQV
GGDYYDFIPT RPELIGRRKE RGRWGLVMGD VMGKGVPAGL LMTMLRGMLR AEVLSGLPPN
RILHDLNQLA QEDLAQSHRF VTLFYSDYDP RTRRLRYANA AHNPPLIWRA EQRSVSRLDV
PGLLIGLQPE ADYSCGEILL KPGDVIIYYT DGVTEASGIT GDRFDEARLI RTMEGSCRSG
LGAQGILDQL FARLDRFVGV DHQLEDDASM VVLKVPEEVT LPSVSLA