Gene NATL1_20961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNATL1_20961 
Symbolgmd 
ID4781168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL1A 
KingdomBacteria 
Replicon accessionNC_008819 
Strand
Start bp1740047 
End bp1741099 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content35% 
IMG OID640085392 
ProductGDP-D-mannose dehydratase 
Protein accessionYP_001015916 
Protein GI124026801 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1089] GDP-D-mannose dehydratase 
TIGRFAM ID[TIGR01472] GDP-mannose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.456617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCAAA AGAAAATTGC TTTAATCACT GGCATAACTG GTCAAGATGG AAGCTACCTA 
GCGGAACTTC TACTTGATAA AGGATATAAA GTTCATGGAC TCGTTAGGAG ATCAAGTCAG
AAAAATACCA ATCTTTTAGA TAACATTTTA AATAGTCAGC ACAATAAAAA TCTTGAACTT
CACTATGGTG ATTTAACACA GAGCACCAAT ATCCTTAGAA TAATTGAAAA TATACAACCA
GATGAGATCT ACAATTTAGG AGCGCAAAGC CATGTCCAAG TAAGTTTCGA GACGCCAGAA
TATACTGCCC AAACTGATGC ATTAGGTCCT CTAAGGATAC TTGAAGCTAT TAGGATTCTG
CAACTCACCA AAAAAACAAA AATTTATCAA GCCAGTACAT CAGAATTGTA TGGACTGGTA
CAAGAAACAC CTCAAAACGA GAGAACACCC TTTTACCCAA GAAGTCCATA TGGAGTCGCG
AAACTTTATG CATATTGGAT AACAATCAAT TATCGAGAAT CGTATGGGAT TTTCGCTTGT
AACGGAATTT TATTTAATCA TGAATCTCCT AGACGTGGAG AAAATTTTGT AACAAGAAAA
ATCACCAAAG GATTGTGCGA AATCAACAGG GGTTCAACTG ACTGCCTATA TCTAGGGAAT
ATAGATTCTT TGAGGGACTG GGGGCATGCA AAAGATTATG TCGAAATGCA GTGGATGATG
CTTCAACAAG AAAAACCTGA AGATTATGTG ATTTCAACAG GTAAACAAAC TTCTGTTAGG
AGATTTGTTG AATTATGTGC AGAACATTTA AATTGGGGCG GAATTATTTG GGAAGGCAAG
GGGATAGATG AAATAGGGAA GAGAAAAGAT AATAAACAAG TAATTATCAG GATTGATCCA
AATTTATTTC GACCCGCAGA AGTGAATAGC CTATTGGGAG ACTCAGAAAA AGCCTACAAA
AAACTTGGTT GGAAACCTAA ATATAATATC GAGAGTCTGA TAATTGAAAT GATCGAAGAA
GATAAAATAG ACAAGAAATA TAATTATAAT TAA
 
Protein sequence
MSQKKIALIT GITGQDGSYL AELLLDKGYK VHGLVRRSSQ KNTNLLDNIL NSQHNKNLEL 
HYGDLTQSTN ILRIIENIQP DEIYNLGAQS HVQVSFETPE YTAQTDALGP LRILEAIRIL
QLTKKTKIYQ ASTSELYGLV QETPQNERTP FYPRSPYGVA KLYAYWITIN YRESYGIFAC
NGILFNHESP RRGENFVTRK ITKGLCEINR GSTDCLYLGN IDSLRDWGHA KDYVEMQWMM
LQQEKPEDYV ISTGKQTSVR RFVELCAEHL NWGGIIWEGK GIDEIGKRKD NKQVIIRIDP
NLFRPAEVNS LLGDSEKAYK KLGWKPKYNI ESLIIEMIEE DKIDKKYNYN