Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_20821 |
Symbol | |
ID | 4779068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | - |
Start bp | 1725107 |
End bp | 1726114 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640085378 |
Product | type II alternative sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_001015902 |
Protein GI | 124026787 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACGG CAGTAGAGGC TCCTAAGACT AAGTATTCAT CTTCCGCTGC TTCTGCAAGA TCCGTTACGG ATATTGACTT AGTCCGTTCT TACTTGAGAG ATATTGGAAG AGTCCCTTTG CTCTCACACG AGCAGGAAAT TACCTTGGGA AGACAAGTTC AAGATCTCGT TGTCCTTGAA AATCTTGAGA CCGAACTCGA GAGTGATTTA GGGGAAAAGC CAGACATCAA CTTTTTCGCT GACAAGGCTG GACTTTCTCC GATCCAATTA AAAAAGAAGC TGAAGAGTGG TAGAAGAGCA AAAGAGAGAA TGGTTGCAGC CAATCTTCGT TTGGTAGTAA GTGTTGCTAA GAAATACACA AAAAGAAATA TGGAATTATT AGATTTAATT CAAGAAGGAA CTATCGGCTT AGTTCGGGGA GTTGAAAAAT TTGATCCCAC TCGTGGATAC AAGTTTTCAA CCTATGCCTA CTGGTGGATA CGTCAAGGCA TCACACGCGC AATTGCTGAA AAAAGTAGAT CCATAAGATT GCCTATACAC ATAACTGAAA TGCTAAACAA GTTGAAAAAA GGTCAACGAG AATTAAGTCA AGAACTTTCT AGAACTCCAA CCTTGAAAGA ACTATCTGAG TATGTTGAGT TGCCCGAGAC TGACGTTAAA GATTTAATGA GTAGAGCTGG GCAGCCAGTT AGCTTAGAAA CAAAAATTGG CGATGGCGAA GATACTATTT TATTAGATTT ATTATCTAAC GAAATTGATA TGCCCTCCGA GCAAATTGAA AGTGATTGCA TGAAGGGTGA TTTAGAAACA TTACTCGAAC AATTACCCGA ATTACAAAAT CGTGTTTTAA GAATGAGATA CGGTATGGAT GGTGATGATC CTATGAGTCT TACTGGTATT GGAAGAGTTT TGGGTATTAG TAGAGATAGA GTAAGAAATT TAGAAAGAGA TGGTTTGCGA GGTTTAAGAA AAACCGGAGA CTCAGTTGAA GCTTATATGG CTTCTTGA
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Protein sequence | MTTAVEAPKT KYSSSAASAR SVTDIDLVRS YLRDIGRVPL LSHEQEITLG RQVQDLVVLE NLETELESDL GEKPDINFFA DKAGLSPIQL KKKLKSGRRA KERMVAANLR LVVSVAKKYT KRNMELLDLI QEGTIGLVRG VEKFDPTRGY KFSTYAYWWI RQGITRAIAE KSRSIRLPIH ITEMLNKLKK GQRELSQELS RTPTLKELSE YVELPETDVK DLMSRAGQPV SLETKIGDGE DTILLDLLSN EIDMPSEQIE SDCMKGDLET LLEQLPELQN RVLRMRYGMD GDDPMSLTGI GRVLGISRDR VRNLERDGLR GLRKTGDSVE AYMAS
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