Gene NATL1_20821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNATL1_20821 
Symbol 
ID4779068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL1A 
KingdomBacteria 
Replicon accessionNC_008819 
Strand
Start bp1725107 
End bp1726114 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content39% 
IMG OID640085378 
Producttype II alternative sigma-70 family RNA polymerase sigma factor 
Protein accessionYP_001015902 
Protein GI124026787 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACGG CAGTAGAGGC TCCTAAGACT AAGTATTCAT CTTCCGCTGC TTCTGCAAGA 
TCCGTTACGG ATATTGACTT AGTCCGTTCT TACTTGAGAG ATATTGGAAG AGTCCCTTTG
CTCTCACACG AGCAGGAAAT TACCTTGGGA AGACAAGTTC AAGATCTCGT TGTCCTTGAA
AATCTTGAGA CCGAACTCGA GAGTGATTTA GGGGAAAAGC CAGACATCAA CTTTTTCGCT
GACAAGGCTG GACTTTCTCC GATCCAATTA AAAAAGAAGC TGAAGAGTGG TAGAAGAGCA
AAAGAGAGAA TGGTTGCAGC CAATCTTCGT TTGGTAGTAA GTGTTGCTAA GAAATACACA
AAAAGAAATA TGGAATTATT AGATTTAATT CAAGAAGGAA CTATCGGCTT AGTTCGGGGA
GTTGAAAAAT TTGATCCCAC TCGTGGATAC AAGTTTTCAA CCTATGCCTA CTGGTGGATA
CGTCAAGGCA TCACACGCGC AATTGCTGAA AAAAGTAGAT CCATAAGATT GCCTATACAC
ATAACTGAAA TGCTAAACAA GTTGAAAAAA GGTCAACGAG AATTAAGTCA AGAACTTTCT
AGAACTCCAA CCTTGAAAGA ACTATCTGAG TATGTTGAGT TGCCCGAGAC TGACGTTAAA
GATTTAATGA GTAGAGCTGG GCAGCCAGTT AGCTTAGAAA CAAAAATTGG CGATGGCGAA
GATACTATTT TATTAGATTT ATTATCTAAC GAAATTGATA TGCCCTCCGA GCAAATTGAA
AGTGATTGCA TGAAGGGTGA TTTAGAAACA TTACTCGAAC AATTACCCGA ATTACAAAAT
CGTGTTTTAA GAATGAGATA CGGTATGGAT GGTGATGATC CTATGAGTCT TACTGGTATT
GGAAGAGTTT TGGGTATTAG TAGAGATAGA GTAAGAAATT TAGAAAGAGA TGGTTTGCGA
GGTTTAAGAA AAACCGGAGA CTCAGTTGAA GCTTATATGG CTTCTTGA
 
Protein sequence
MTTAVEAPKT KYSSSAASAR SVTDIDLVRS YLRDIGRVPL LSHEQEITLG RQVQDLVVLE 
NLETELESDL GEKPDINFFA DKAGLSPIQL KKKLKSGRRA KERMVAANLR LVVSVAKKYT
KRNMELLDLI QEGTIGLVRG VEKFDPTRGY KFSTYAYWWI RQGITRAIAE KSRSIRLPIH
ITEMLNKLKK GQRELSQELS RTPTLKELSE YVELPETDVK DLMSRAGQPV SLETKIGDGE
DTILLDLLSN EIDMPSEQIE SDCMKGDLET LLEQLPELQN RVLRMRYGMD GDDPMSLTGI
GRVLGISRDR VRNLERDGLR GLRKTGDSVE AYMAS