| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_18851 |
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| Symbol | rpoC1 |
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| ID | 4780050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | - |
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| Start bp | 1544451 |
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| End bp | 1546358 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640085174 |
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| Product | DNA-directed RNA polymerase subunit gamma |
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| Protein accession | YP_001015705 |
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| Protein GI | 124026590 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02387] DNA-directed RNA polymerase, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAATA GCAATCTACG TACGGAAAAT CATTTTGATT ATGTAAAAAT AAAATTAGCA
TCGCCTGAAA GAGTAATGGA GTGGGGGCAA AGGACTTTGC CTAATGGTCA GGTTGTAGGG
GAAGTAACTA AGCCAGAAAC AATAAATTAT CGAACACTCA AGCCTGAAAT GGATGGGTTG
TTTTGTGAAA AGATTTTTGG TCCGTCCAAG GATTGGGAAT GTCATTGTGG GAAATATAAG
AGGGTTAGAC ATCGTGGAAT TGTTTGTGAG AGGTGTGGTG TTGAAGTAAC AGAAAGTCGA
GTTAGGAGAC ATAGAATGGG ATTTATTAAA TTAGCAGCTC CTGTATCACA TGTTTGGTAT
CTAAAAGGTA TTCCTAGCTA TGTAGCTATT TTGTTAGATA TGCCTCTTAG AGATGTTGAG
CAAATCGTCT ACTTTAATTG TTATGTGGTT TTAGATATTG GAGATAGTAA AGATTTAAAA
TATAAGCAGC TATTAACAGA AGATGAATGG CTTGAGATTG AAGACGAGAT TTATGCCGAG
GATTCAACTA TTGAGAATGA ACCCATCGTT GGCATAGGTG CAGAGGCCTT AAAACAATTA
CTTGAAGATT TAAATTTAAA AGAAGTTGCT GAGCAATTAC GAGAAGATAT TGCAACAAGT
AAAGGTCAAA AAAGGGCTAA GCTTATAAAA AGACTAAGGG TAATAGATAA CTTTATTGCT
ACAAGCGCAA GTCCAGAATG GATGGTTTTA GATGCGATAC CTGTAATACC TCCTGATTTG
AGGCCTATGG TGCAACTAGA TGGAGGTAGA TTCGCTACCT CAGATTTAAA TGATTTATAT
AGAAGAGTAA TCAATAGGAA CAACCGTCTT GCTCGTCTTC AGGAAATACT AGCTCCGGAA
ATAATAGTCA GAAATGAAAA AAGGATGCTG CAAGAGGCTG TAGATGCACT TATTGATAAT
GGTAGAAGAG GACGAACTGT TGTTGGCGCA AATAATCGCC CCTTGAAATC ATTAAGCGAT
ATTATCGAGG GTAAGCAAGG TAGATTTAGA CAGAATTTGC TTGGGAAAAG AGTTGATTAT
TCAGGTCGCT CGGTAATAGT AGTTGGCCCC AAGTTGAAAA TGCATCAATG TGGATTGCCA
AAGGAAATGG CGATAGAACT TTTTCAGCCT TTTGTAATTC ATCGATTGAT TCGCCAGAAC
ATTGTCAATA ACATAAAAGC TGCAAAGAAA TTGATACAGA AAGCAGACGA TGAAGTAATG
CAGGTATTAC AGGAAGTCAT AGAGGGTCAT CCTATCCTGC TTAACCGTGC TCCTACTTTG
CACCGATTAG GCATTCAAGC TTTTGAACCT AAATTAGTTG CTGGACGAGC TATACAGCTA
CATCCATTAG TATGTCCAGC TTTTAATGCT GATTTTGATG GAGATCAAAT GGCTGTTCAT
GTGCCTTTGG CAATTGAAGC GCAAACAGAA GCAAGGATGT TAATGCTAGC GAGTAACAAT
ATTCTTTCCC CTGCAACTGG GGATCCAATA GTTACCCCAT CTCAAGATAT GGTTTTAGGG
TCTTACTACC TTACTGCAAT TCAGCCTCAA GCAAAGCAGC CAAAGTTCGG AGATTATTCA
GATACCTATG CATCACTTGA AGATGTTTTA CAAGCTCTTG AAGATAAAAG AATAGATTTA
CATGATTGGG TTTGGGTTCG ATTTTCTGGT GAAATTGAGG ATGACGATGA GCTTCAGAAA
CCGCTTAAGT CAGAGACTTT GAAAGACGGT ACCCGTATTG AGGAATGGAC ATATCGACGT
GACCGATTAG ATGAAGATGG AAGTTTAATT AGCCGTTATA TATTGACTAC TGTTGGCCGT
GTCGTAATGA ACCATACAAT TATTGATGCC GTAGCAGCCA CTTCGTAA
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| Protein sequence | MTNSNLRTEN HFDYVKIKLA SPERVMEWGQ RTLPNGQVVG EVTKPETINY RTLKPEMDGL
FCEKIFGPSK DWECHCGKYK RVRHRGIVCE RCGVEVTESR VRRHRMGFIK LAAPVSHVWY
LKGIPSYVAI LLDMPLRDVE QIVYFNCYVV LDIGDSKDLK YKQLLTEDEW LEIEDEIYAE
DSTIENEPIV GIGAEALKQL LEDLNLKEVA EQLREDIATS KGQKRAKLIK RLRVIDNFIA
TSASPEWMVL DAIPVIPPDL RPMVQLDGGR FATSDLNDLY RRVINRNNRL ARLQEILAPE
IIVRNEKRML QEAVDALIDN GRRGRTVVGA NNRPLKSLSD IIEGKQGRFR QNLLGKRVDY
SGRSVIVVGP KLKMHQCGLP KEMAIELFQP FVIHRLIRQN IVNNIKAAKK LIQKADDEVM
QVLQEVIEGH PILLNRAPTL HRLGIQAFEP KLVAGRAIQL HPLVCPAFNA DFDGDQMAVH
VPLAIEAQTE ARMLMLASNN ILSPATGDPI VTPSQDMVLG SYYLTAIQPQ AKQPKFGDYS
DTYASLEDVL QALEDKRIDL HDWVWVRFSG EIEDDDELQK PLKSETLKDG TRIEEWTYRR
DRLDEDGSLI SRYILTTVGR VVMNHTIIDA VAATS
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