Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_17001 |
Symbol | trmD |
ID | 4780492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | - |
Start bp | 1384402 |
End bp | 1385628 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640084984 |
Product | putative bifuntional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_001015520 |
Protein GI | 124026405 |
COG category | [I] Lipid transport and metabolism [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [COG0336] tRNA-(guanine-N1)-methyltransferase |
TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.197185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTAAAT TAAGATTCGA TGTCGTAAGC CTTTTTCCAG AAGCTTTTAA AAATTTTTTT AATCATGGAC TAATAAAAAA AGCATTTGAA GAGAAGATTG CATCAATTCA TATACATAAT CCTCGTGACC ACGCTATGGA TAATTATCGA AAAGTTGATG ATGAGCCATA TGGCGGAGGC GCAGGAATGG TCTTAAAGCC AGAACCCTAC TTTTCGGTTT TTGATCAAAT TCCAAAGCTC AATAAAAAAA GAATACTTTT GATGACTCCA CAAGGTAGAA AAATATCTCA ACCTGATTTT TCTAGATGGT CAAAAGAAGA TCAACTCATA TTGATATGTG GTAGCTATGA GGGATTTGAT GAAAGGATTA GGTCTTTAGC TGATGAAGAA ATTTCAATTG GAGACTTTGT TCTTACGGGT GGAGAAATTC CTGCAATAAC TCTTATTAAT GGAGTTGTAC GTCTATTACC GGGAACTTTA GGCAGTGCCG AATCATTAGA AGAAGAAAGT CATAATGAGT TTCTTTTAGA ACATCCCCAA TACACCCGAC CTGCAGAATT TAGAGGTGTG AAAGTTCCTG ATGTCCTTTT AAGTGGTAAT CATAAATTAA TTAGAGAATG GAGGCAGAAG CAAAGAGAAA TCAGGACGAA GTCACGTAGA CCCGATTTGT TCGAACTTTG GAAGCTCGAC CAATTATCAT TTATTAAAAG AAGTTCATTA TTGAAAACTG AAGTGAACTT ACGAATAGGC AACGGTTATG ACATGCACCG ATTGGTTTCT GGACGACCTT TAATTCTTGG AGGGGTCGAG TTAAACCATC CAGAGGGTTT AGGCCTTGAT GGGCATAGTG ATGCAGATGT TCTTACTCAT GCAATTATGG ACGCAATATT AGGTGCCTTA TCATTGGGTG ATATTGGAAA GTATTTCCCT CCAGATGACC CTAAGTGGAA AAATGCAGAC AGTTTAATTC TGCTTGGACA TGTCATGGAA TTAATTGAGA AGAAAGGTTG GCAAATTCAA AATATTGATT CAGTTATTGT CGCTGAAAGG CCAAAACTAA AACCTTATAT TGACTTAATG AAGGAGAAGA TATCTAAGAA AATAGGATTG AATATTGATG ATGTAGGAGT TAAAGCTACT ACAAATGAGA AATTAGGTGC GGAGGGAAGA GAAGAGGGTA TATGTTGTCA TGCAGTTGTT TTAATGAAAA GGAATGAAAA CTCTTAG
|
Protein sequence | MTKLRFDVVS LFPEAFKNFF NHGLIKKAFE EKIASIHIHN PRDHAMDNYR KVDDEPYGGG AGMVLKPEPY FSVFDQIPKL NKKRILLMTP QGRKISQPDF SRWSKEDQLI LICGSYEGFD ERIRSLADEE ISIGDFVLTG GEIPAITLIN GVVRLLPGTL GSAESLEEES HNEFLLEHPQ YTRPAEFRGV KVPDVLLSGN HKLIREWRQK QREIRTKSRR PDLFELWKLD QLSFIKRSSL LKTEVNLRIG NGYDMHRLVS GRPLILGGVE LNHPEGLGLD GHSDADVLTH AIMDAILGAL SLGDIGKYFP PDDPKWKNAD SLILLGHVME LIEKKGWQIQ NIDSVIVAER PKLKPYIDLM KEKISKKIGL NIDDVGVKAT TNEKLGAEGR EEGICCHAVV LMKRNENS
|
| |