| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_15221 |
|---|
| Symbol | |
|---|
| ID | 4780699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | - |
|---|
| Start bp | 1237265 |
|---|
| End bp | 1238509 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640084804 |
|---|
| Product | putative lycopene beta cyclase |
|---|
| Protein accession | YP_001015344 |
|---|
| Protein GI | 124026228 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR01790] lycopene cyclase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAATTGA ATAATGTCGC TGATGTATTA GTCATGGGAG CAGGACCTGC TGCTCTTTGC
ATCGCTGCTG AGTTAGTTCA ACACGGACTT GATGTTCAGG CGATTGCTTC TAAGTCTCCT
TTAGAACCTT GGCCAAACAC TTATGGGATT TGGGCATCTG AACTTGAGTC TTTAAATATG
CAAGAACTAT TGAAATATAG ATGGGAAGAT ACTGTTAGCT TTTTTGGAGA TGGATTAGGT
GGAAAAGGTA ATATTTGTAC AAATCATTAT CTTGATTACG GCCTCTTTAA TTCAATTAAT
TTTCAGGAGG CTCTTCTTGA GAGATGTAAT GGACTTCCTT GGCAACTAGA AACTGTTGAT
AATATTGATT TTAGAGAAAG AGAGACCGTT GTTATTTGTA CTTCCGGAAA AAAATATTTT
GCTAGGCTCG TTATTGATGC AAGTGGTTAT AAAACCCCTT TTATCAGGAG GCCTAAGCAT
GATCAAATCG CTAAGCAAGC GGCATATGGG GTGGTTGGGA AATTTAGTTC TGCTCCTGTA
GAGAAAAATC GTTTTGTATT GATGGATTTT AGATCAGACC ATTTAAATGC CAACGAATTA
GAGGAGCCAC CTTCTTTCCT TTATGCTATG GACCTTGGAG ATGGTAGTTA TTTTGTAGAA
GAAACATCTT TGGCTTGTTC ACCTCCAATT TCATTTGAAT CATTAAAAGC AAGATTAAAT
TTACGACTAT CTAATAAAGG TATTCAAATA GACGAAATTT TCCATGAAGA ACATTGTCTT
TTTCCAATGA ACTTGCCATT GCCTTATAGA GATCAACCCC TTTTGGCCTT TGGAGGCTCG
GCCAGTATGG TTCATCCTGC TTCGGGATAT CTTGTTGGAT CCCTTTTAAG GAGAGCACCT
TCATTAGCAA GTGAAATAGC AAAAGTAATT AAAAAAGAAC CTCTTATGAC TACATCTCAG
ATAGCCATAA GAGGATGGAA AACCCTATGG ACAAATGAAT TAGTTCAAAG ACATCGTCTT
TATCAGTTTG GACTTCAAAG ACTAATGAGC TTTGACGAAA CTTTATTAAG ATCTTTTTTT
GATACTTTTT TTAAATTACC TAAAAAAGAT TGGTTCGGAT ATTTAACTAA TACGCTTCCT
TTGCCAAGAC TTTTTATTGT GATGCTCAAA CTATTTTACA TCGCCCCATC CAAGGTCAGG
TTGGGAATGA CTGGTTTACT TATAAACAAG CGTGAAAAAA CTTAG
|
|---|
| Protein sequence | MKLNNVADVL VMGAGPAALC IAAELVQHGL DVQAIASKSP LEPWPNTYGI WASELESLNM
QELLKYRWED TVSFFGDGLG GKGNICTNHY LDYGLFNSIN FQEALLERCN GLPWQLETVD
NIDFRERETV VICTSGKKYF ARLVIDASGY KTPFIRRPKH DQIAKQAAYG VVGKFSSAPV
EKNRFVLMDF RSDHLNANEL EEPPSFLYAM DLGDGSYFVE ETSLACSPPI SFESLKARLN
LRLSNKGIQI DEIFHEEHCL FPMNLPLPYR DQPLLAFGGS ASMVHPASGY LVGSLLRRAP
SLASEIAKVI KKEPLMTTSQ IAIRGWKTLW TNELVQRHRL YQFGLQRLMS FDETLLRSFF
DTFFKLPKKD WFGYLTNTLP LPRLFIVMLK LFYIAPSKVR LGMTGLLINK REKT
|
|---|
| |