Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_14791 |
Symbol | srmB |
ID | 4780880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | + |
Start bp | 1189779 |
End bp | 1191548 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640084760 |
Product | putative ATP-dependent RNA helicase |
Protein accession | YP_001015301 |
Protein GI | 124026185 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.459404 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.230286 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAATA AAAATCCACA TGAGGATTCC TCATGTCCAG TAGAACAAGA TGTTCTCGAG GAATCTACTG AGGAAATATT AGAGGAAAGT GAGCAAAATT CAGAAAATGG ATTTTCTGAA TTTAATTTTA GTGAAGAACT AATTCAAACA ATCTCTGATA AAGGCTACTC ATCACCTACT CCGATTCAAA AAGCTGCAAT TCCTGAATTG CTTCTTGGTA GAGATTTAGT TGGACAAGCT CAAACTGGTA CAGGAAAAAC CGCCGCATTT GCTTTACCAA TACTAGAAAG GTTGAAAAAG AATGTTGGAC ATCCACAAGT TTTAGTTCTT GCTCCAACCC GCGAGTTGGC TATGCAAGTA GCTGAATCAT TTCGAACATA TTCGGCAGGT CATCCGCATT TTAAAGTGCT TGCAATATAT GGAGGCTCTG ATTTCCGAAA TCAAATTAAC ACTCTCAGGA GGGGAGTCGA TGTAGTCGTA GGGACTCCGG GGCGAGTCAT GGATCACATG CGTCAAAAGA CTCTAAATAC TAGTCATCTG AGTTGTTTAG TTCTAGACGA GGCTGATGAG ATGTTAAGGA TGGGGTTTAT TGATGACGTT GAGTGGATTT TAGAACAATT GCCAGAGGAG AGACAACTAG TTTTATTCTC AGCGACAATG CCATCTGAGA TCAGAAGATT ATCAAAAAAA TATTTAAATA GCCCTGCAGA AATAACTATA AAAGCAACTG AATTGAAAGA AAGGCTTATA AGGCAAAGGT ATATAAGCGT TCAAAATGTT TATAAAGTTA ATGCACTTCA AAGAGTACTT GAAGCTGTAT CAGAAGAAGG GGTAATAATA TTTGCTAGAA CAAAAGCCAT AACAATCGTA GTAGCTGAAA AATTAGAATC ATATGGATAT AACGTAGCAG TTTTAAATGG AGATATTCCT CAAAATCAAA GGGAACGAAC TGTTGAAAGA TTAAGACAAG GATCTATCAA TATTTTAGTA GCTACAGATG TCGCAGCAAG AGGTCTTGAT GTAGATCGAA TTGGTTTAGT AATAAATTAC GATATGCCAT TTGATCGCGA AGCATATGTT CATAGAATTG GCAGAACAGG TCGTGCAGGA AGAAATGGTG AAGCAATTCT TTTTGTTAAT CCTAGAGAAA GATCATTTTT AAGTAATCTT GAAAGAGCTG TAGGTCAGCC AATTGAAAAA ATGGATATTC CAGACAATGA CCTTATAAAC AATAACCGAA TTAAGAAATT ACAAGCAAAA TTAATAAAAG CCGCCTCAAC AGAGAGAGAC AACCCAGAAG AGGCTAACAT TTTAGAAGAA TTAATAAAAA ATGTTGAAAA AGAATTAGAT ATAGATCCAA AAGACTTAAC ACTTGCCGCA TTAAATTTGG CAGTTGGATT TAACGCACTC CTTGAGAATG GCAATGAGGA TTGGATAAGA CAATCAGCTC AAAGGAATAC AAGAAATGAT CGCAGGGACA ATAATAAATT CAAGCAACGT CGAAGAGGTG ATTTTGATAA CAACAGACTT GAAGATGAAA TGGACAGATT CAGGGTTGAA GTTGGGCACC GAGATAGAGT TAAGCCTGGA AATCTAGTTG GGGCAATTGC TAACGAGGCC GGACTAAAAG GGAGATCGAT AGGAAGAATA AGAATATTTG AAAATTACAG CCTAGTAGAT CTCCCAAAAC AAATGCCTGA TAAAGTTTTC CAAGCTCTAA AGAAAGTCAA AGTAATGAAT AGAGAGTTAC AGATAAATAG AGCAGACTAA
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Protein sequence | MTNKNPHEDS SCPVEQDVLE ESTEEILEES EQNSENGFSE FNFSEELIQT ISDKGYSSPT PIQKAAIPEL LLGRDLVGQA QTGTGKTAAF ALPILERLKK NVGHPQVLVL APTRELAMQV AESFRTYSAG HPHFKVLAIY GGSDFRNQIN TLRRGVDVVV GTPGRVMDHM RQKTLNTSHL SCLVLDEADE MLRMGFIDDV EWILEQLPEE RQLVLFSATM PSEIRRLSKK YLNSPAEITI KATELKERLI RQRYISVQNV YKVNALQRVL EAVSEEGVII FARTKAITIV VAEKLESYGY NVAVLNGDIP QNQRERTVER LRQGSINILV ATDVAARGLD VDRIGLVINY DMPFDREAYV HRIGRTGRAG RNGEAILFVN PRERSFLSNL ERAVGQPIEK MDIPDNDLIN NNRIKKLQAK LIKAASTERD NPEEANILEE LIKNVEKELD IDPKDLTLAA LNLAVGFNAL LENGNEDWIR QSAQRNTRND RRDNNKFKQR RRGDFDNNRL EDEMDRFRVE VGHRDRVKPG NLVGAIANEA GLKGRSIGRI RIFENYSLVD LPKQMPDKVF QALKKVKVMN RELQINRAD
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