| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_10191 |
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| Symbol | cspR |
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| ID | 4779769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 944837 |
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| End bp | 945337 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640084297 |
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| Product | SpoU family tRNA/rRNA methyltransferase |
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| Protein accession | YP_001014842 |
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| Protein GI | 124025726 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
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| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.349898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000072924 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATTCAT TAAATCGAAC AAGACCTCGT GTCTCATTAT TTGAACCAAG AATTCCACAG
AACACTGGAA CAATTGGTAG AACATGCTTA GCCTTTAATA TGTCATTAGA TATTATTAAG
CCAACTGGAT TTAGCTTCGA AGATAAATAT TTAAAAAGAG CAGGTTTAGA TTATTGGCCT
CACGTAGATG TACATTTATA TGAATCGTTT GATCAATATA AAAATTCATT TAAAAACTCA
AGAATTATAG CTTTTACAAA AAAAAGTAAT AATTTAATTT CAAATATTAT TTATAAAGAT
ACAGATATAC TATTATTTGG ACGAGAGGAT ACAGGTTTGC CCGAAAGCAT AATTAATAAG
TGTGAAATTG TCGCAGGAAT ACCTATGCCA GGAGGTGAGA ATCAATTAAA GACAGGGGGA
GTTAGAAGTT TGAATTTATC CGTTGCCAGT GGTATCGTTT GTTATTATGC ATGTTTACAA
TTAAACTTAT TAAGCAAGTA G
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| Protein sequence | MNSLNRTRPR VSLFEPRIPQ NTGTIGRTCL AFNMSLDIIK PTGFSFEDKY LKRAGLDYWP
HVDVHLYESF DQYKNSFKNS RIIAFTKKSN NLISNIIYKD TDILLFGRED TGLPESIINK
CEIVAGIPMP GGENQLKTGG VRSLNLSVAS GIVCYYACLQ LNLLSK
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