| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_09981 |
|---|
| Symbol | dacB |
|---|
| ID | 4781235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | + |
|---|
| Start bp | 919287 |
|---|
| End bp | 920522 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640084276 |
|---|
| Product | D-Ala-D-Ala carboxypeptidase 3 |
|---|
| Protein accession | YP_001014821 |
|---|
| Protein GI | 124025705 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.736023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.420849 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AACTTTCTTT ATATATTGGA TTAATAATTA TATCGATAAA TACAGCTAAT
GGTAATTTGT TTTCGATATA TTCCTACGTC CGACAAAGAA TTAATATTAA TTCTATAACT
CCTGAAGAGA CAAATATATG TTATGCATTA CAAAAAAAGA TAGAGGATTA TATTGATAAC
TTTAATAGTA AAATAAGTGT TAATATATTA AATAAAAATG GTGAGTTTAT TGTAGATATA
AATGGAAAAA TTCCTAGAAT TCCTGCATCG AATCAAAAGA TTTTGTCGAG CGCTTTTTCT
TTAGATAATT TAGGACCAAA CTATATTCTC AAAACATCTC TAAATGAGAT GAGTAATGGA
GGCTTATACC TTGATGCCTC TGGTGATCCT GACTTTGATA AAAGACATTT AGATGAGTTA
CTAAGAGGAC TAAATAGTAA GGAGTTTAAT ACTGGTATTA AATTACCAAT TTTAATCACT
AGTAGTAAAG AAAATACTTG GTGGCCTCCT AGCTGGTCCT ATTCTGATAG GAAAGAGGAG
TATGGAGCAC CAATTACTAA GTACTCGATA GCTAGTAATG CAAGTACAAA TGCTTTAAAC
AATCCAATAG ATAATTTTAT GAATGAGTTA AAGACTTCTC TAGTAAGAAA TAACTTAGCA
AGTAAATATT TTATTAAACC CGTTTATAAT GATTTTTCTA TCGATTTTGT TTCTACTATC
AAAAGTGTTA ATTCTGCGCC CTTATATATT TTGCTTAATC TAGTTAATTC AGAAAGCCAT
AATTATACAG CTGAGGTTGT TTTTAGACAT TCATTAAATA ACTGGTCTCA TGATTTTCCT
AATGTTAAAT ACACTAAGTG GATAAATGAT CAGAACTTTG ATTCAGATGA TTTTATCTTT
GCTGATGCTA GTGGTTTATC AAGAGAAAAT AGAGTTACCA CATATGGTTT ATCTCAATTT
TTGAGAAGAA TGCAATTAAG TAGATATTCC GATTATTATT TCTCATCTTT TTCTATTTTA
GGGGTTAGAG GATCATTGAA AAATGTAAAA GCCCCAATAA ATCTCAAAGG GAGAATTTTG
GCTAAATCAG GAAGACTTAG TAACGTTAGA TCTATTTCTG GTATTATATT AGGTAAAGAT
AAAATATTTA GTATTATTGT TAATAATAAG GAAAATTCGA CGAAGAATAT TATTAATATT
TTATCAATAG TAGATAATAC TAATTATTGT ACTTAA
|
|---|
| Protein sequence | MKKKLSLYIG LIIISINTAN GNLFSIYSYV RQRININSIT PEETNICYAL QKKIEDYIDN
FNSKISVNIL NKNGEFIVDI NGKIPRIPAS NQKILSSAFS LDNLGPNYIL KTSLNEMSNG
GLYLDASGDP DFDKRHLDEL LRGLNSKEFN TGIKLPILIT SSKENTWWPP SWSYSDRKEE
YGAPITKYSI ASNASTNALN NPIDNFMNEL KTSLVRNNLA SKYFIKPVYN DFSIDFVSTI
KSVNSAPLYI LLNLVNSESH NYTAEVVFRH SLNNWSHDFP NVKYTKWIND QNFDSDDFIF
ADASGLSREN RVTTYGLSQF LRRMQLSRYS DYYFSSFSIL GVRGSLKNVK APINLKGRIL
AKSGRLSNVR SISGIILGKD KIFSIIVNNK ENSTKNIINI LSIVDNTNYC T
|
|---|
| |