| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_09721 |
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| Symbol | dxs |
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| ID | 4780095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 892530 |
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| End bp | 894416 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640084249 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001014795 |
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| Protein GI | 124025679 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.274515 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTGA GCCAGTTAAG TCATCCGAAT GAGCTTCATG GCTTAGCCAT TAGTGAATTG
GAAGATGTTG CTTGCCAAAT TAGAGAAAGG CATCTTCAAG TAGTTTCTAC TAGTGGTGGG
CACTTAGGTC CAGGTCTTGG TGTTGTTGAG TTAACAATTG CTCTCTATCA GACTTTAGAT
CTAGATGTAG ATAAAGTTAT TTGGGATGTT GGACATCAAG CTTATCCTCA CAAGTTACTT
ACGGGAAGAT ATAACCGATT TGATTCTCTC AGACAGCAAA AAGGCGTAGC TGGTTATCTA
AAAAGAACAG AAAGTAAATT TGATCATTTT GGAGCTGGAC ATGCGAGCAC ATCAATTTCA
GCCGCTCTTG GTATGGCTAT TGCCAGAGAC CGAAAAGGGG AAGATTATAA ATGTGTTGCG
GTAATTGGAG ATGGTGCTCT TACCGGTGGA ATGGCTTTAG AGGCTATTAA TCATGCAGGA
CATCTTCCAA AAACACCTCT TTTGGTTGTC CTAAATGATA ATGATATGTC GATTTCTCCT
CCTGTTGGAG CATTATCGAC TTATTTAAAT CGTATGCGTC ATAGCCCGCC TGTTCAATTC
ATATCTGATA GTGTCCAAGA AAGTGTGAAA AATCTTCCTT TCATGGGAGA TGCTATGCAA
GAGGAATTTA AATCTCTTAC AGGCAGTGTT AGACGTTTAG CAGTTCCAAG TGTTGGTGCA
GTTTTTGAGG AATTGGGTTT TACTTATATG GGTCCTGTAG ATGGGCATGA TATTGCTGAA
TTGACTAGAA CCTTTAATGC TGCGCATAAA GTTGGTGGAC CTGTTATGGT CCATGTCGCT
ACTACAAAGG GAAAAGGTTA TCCATATGCT GAAGCTGATC AGGTTGGTTA CCATGCTCAG
TCTTCCTTTG ATCTAACAAC AGGAAAATCT ATTCCTTCTA AAACTCCTAA ACCTCCAAGT
TTTAGCAAGG TATTTGGTCA AACTTTAGTA AAACTTTGCG AGCAAGACAG CAAAATTGTA
GGTATTACTG CTGCAATGGC AGAAGGCACA GCTTTAAATC TTTTACAGAA AGCTATTCCT
GATCAATATG TTGATGTTGG TATAGCAGAA CAACATGCTG TAACTCTTGC TGGTGGTATG
GCTTGCGAAG GTATCAAACC AGTTGTTGCC ATTTACAGTA CTTTTTTACA ACGTGCATAT
GATCAGTTGA TCCATGATAT TGGAATACAG AATTTACCTG TAACTTTCGT ATTAGATAGA
GCTGGAATTG TTGGTGCTGA TGGTCCAACT CATCAAGGGC AATATGACAT TAGTTATTTA
AGGTGTATTC CTAACTTTAC TGTTATGGCT CCAAAAGATG AGTCTGAATT GCAGCAAATG
CTGGTTACAT GTATTAATCA CAATGGTCCA TCAGCTTTAA GGATACCTAG AGGTTCTGGA
GAAGGAGCAG CTTTGATGGA GGAAGGATGG GAATCTCTAG AAATTGGTAA AGCTGAGACT
ATAGAAGAGG GCGAAAACTT ATTAATAATT GGTTATGGCT CTATGGTTTT CCCAGCAATT
AAAACTGCAG CAATACTGAA AGAATTTGGA GTGAATTGTA CTGTTATTAA TGCTCGCTTC
ATAAGACCAT TAGACGAGGA TACTATTCAT GAGGCAGCAA AAAGAATAGG CAAAGTAGTA
ACAATGGAAG AAGGAACACT ATTGGGCGGC TTTGGATCTG CTGTTGTTGA ATCTTTTAAT
GATAATGATA TTTTTGTCCC TACATTAAGA ATTGGAATAC CTGATAAATT AGTCGATCAT
GCAACGCCGC AACAAAGCAA GGAATCGCTT GGATTAACTC CCGAAATGAT GGCTGATCAA
ATTAGAAATA AATTTAATTT TAATTAA
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| Protein sequence | MRLSQLSHPN ELHGLAISEL EDVACQIRER HLQVVSTSGG HLGPGLGVVE LTIALYQTLD
LDVDKVIWDV GHQAYPHKLL TGRYNRFDSL RQQKGVAGYL KRTESKFDHF GAGHASTSIS
AALGMAIARD RKGEDYKCVA VIGDGALTGG MALEAINHAG HLPKTPLLVV LNDNDMSISP
PVGALSTYLN RMRHSPPVQF ISDSVQESVK NLPFMGDAMQ EEFKSLTGSV RRLAVPSVGA
VFEELGFTYM GPVDGHDIAE LTRTFNAAHK VGGPVMVHVA TTKGKGYPYA EADQVGYHAQ
SSFDLTTGKS IPSKTPKPPS FSKVFGQTLV KLCEQDSKIV GITAAMAEGT ALNLLQKAIP
DQYVDVGIAE QHAVTLAGGM ACEGIKPVVA IYSTFLQRAY DQLIHDIGIQ NLPVTFVLDR
AGIVGADGPT HQGQYDISYL RCIPNFTVMA PKDESELQQM LVTCINHNGP SALRIPRGSG
EGAALMEEGW ESLEIGKAET IEEGENLLII GYGSMVFPAI KTAAILKEFG VNCTVINARF
IRPLDEDTIH EAAKRIGKVV TMEEGTLLGG FGSAVVESFN DNDIFVPTLR IGIPDKLVDH
ATPQQSKESL GLTPEMMADQ IRNKFNFN
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