Gene NATL1_07981 details

Gene Information

• Locus tag: NATL1_07981
• Symbol: typA
• ID: 4779874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL1A
• Kingdom: Bacteria
• Replicon accession: NC_008819
• Strand: +
• Start bp: 733452
• End bp: 735248
• Gene Length: 1797 bp
• Protein Length: 598 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 640084073
• Product: tyrosine binding protein
• Protein accession: YP_001014621
• Protein GI: 124025505
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00485] translation elongation factor TU; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.633904
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTTTTG ATATACAAGC TATTAGGAAT ATCGCAATAA TTGCTCACGT TGATCACGGT 
AAGACAACTT TGGTTGATGC TCTTTTAAAT CAATCTGGAA CTTTTCGAGA TAACGAGGAA 
GTCCCAACTT GTGCGTTGGA TTCGAATGAA TTGGAACGTG AAAGAGGTAT AACAATTCTT 
TCGAAAAACA CAGCTGTTAC TTATAACGAT ACTCGGATAA ACATTGTTGA TACACCAGGC 
CACGCTGATT TTGGAGGAGA AGTCGAGAGG GTTTTGGGAA TGGTAGATGG CTGTCTTCTT 
GTTGTTGATG CTAACGAGGG ACCAATGCCA CAAACTCGAT TCGTTCTGAA AAAAGCTTTA 
GAGCAAGGAT TAAGACCTAT TGTGTTTGTG AATAAAATTG ATCGTGCAAG GGTAGAACCA 
GAAACCGCGG TAGACAAGGT TTTAGATCTG TTTTTGGAGT TAGGCGCTGA TGATGATCAA 
TGTGATTTTC CTTATCTATT TGGGAGTGGA TTAGGGGGGT TTGCCAAGAC TGAAGTAAAA 
AGTGAAAACG ATAATATGAA ACCTTTATTT GAAGCAATTA TTAGACAAGT TCCTCCTCCA 
GTTGGCGATG TGAATAAGCC TTTACAATTA CAAGTCACGA CCCTAGATTA CTCAGATTTC 
TTAGGAACAA TTATTATTGG AAGAGTACAT AATGGTGTAA TTAAAAACGG CCAAAGGACA 
TGTTTGATAA AGGAAGACGG TAGTTTAAAA AAAGGAAGGA TTAATAAATT ATTAGGATTT 
AAGGGATTAA AAAGAATTGA AATTGAAGAA GCAAATGCTG GAGATATAGT TGCCTTGGCT 
GGCTTTGATG AAGTTTCTAT TGGTGAAACT GTAGCCTGCC CTGATGAGCC GAAACCTTTA 
CCTCTAATTA AGGTAGATGA GCCAACCTTG CAGATGACTT TTGTTGTCAA TGATTCTCCT 
TTTGCAGGGA AAGAGGGCAA GTTCGTAACC AGTCGGCAGT TGAAGGATCG TTTAAATAAA 
GAACTTCTAA CGAATGTTGC TTTAAGAGTT GAAGATACGG ATTCTCCTGA CCGTTTTTCT 
GTTAGTGGAA GGGGAGAGTT ACATCTAGGA ATTCTTATAG AGACAATGAG AAGAGAGGGG 
TATGAATTTC AAGTTTCTCA ACCACAAGTA ATTTTCAGGA CAATAGATGA AATTAAATGT 
GAACCTGTTG AAACGCTTGT CCTTGACGTC CCTGAAGCTT CGATTGGTGC TTGTATTGAG 
AGCCTTGGGG TAAGAAAAGG TGAAATGCAA AACATGGAAA CTGGTACTGA TCACCGAACT 
CAACTTGAGT TTGTTATTCC CTCAAGAGGC TTGATTGGAT TTAGGGGTGA ATTTATTCGT 
GCAACAAGAG GAGAAGGGAT TATGAGTCAT TCATTTTTTG AATACAGGCC ATCTGTAGGA 
GATTTTGAGC AAAGGAGAAA TGGAGTCCTT ATTTCATTTG AAGAGGGTGT CGCTACGTTC 
TATTCCCTAA AGAATGCAGA AGACCGTGGA CAATTTTTTA TTACTCCTGG AGCCAAGGTT 
TATAAAGGAA TGATTATTGG GGAGAATAAA CGCCCACAGG ATCTTGAATT AAATATCTGT 
AGGGCTAAAC AACTTACCAA TATGCGATCA GCTGGTGCAG AGGAGCTAGA TCAATTGCAA 
TCCCCAATTG AAATGACATT AGAAAGAGCT CTTGAATACA TTGGACCAGG TGAGATGTTG 
GAAGTTACTC CTGAATCAAT AAGGCTTAGA AAAATTAAAG CAAAGAAAAA TTTGTAA 

 

Protein sequence

MSFDIQAIRN IAIIAHVDHG KTTLVDALLN QSGTFRDNEE VPTCALDSNE LERERGITIL 
SKNTAVTYND TRINIVDTPG HADFGGEVER VLGMVDGCLL VVDANEGPMP QTRFVLKKAL 
EQGLRPIVFV NKIDRARVEP ETAVDKVLDL FLELGADDDQ CDFPYLFGSG LGGFAKTEVK 
SENDNMKPLF EAIIRQVPPP VGDVNKPLQL QVTTLDYSDF LGTIIIGRVH NGVIKNGQRT 
CLIKEDGSLK KGRINKLLGF KGLKRIEIEE ANAGDIVALA GFDEVSIGET VACPDEPKPL 
PLIKVDEPTL QMTFVVNDSP FAGKEGKFVT SRQLKDRLNK ELLTNVALRV EDTDSPDRFS 
VSGRGELHLG ILIETMRREG YEFQVSQPQV IFRTIDEIKC EPVETLVLDV PEASIGACIE 
SLGVRKGEMQ NMETGTDHRT QLEFVIPSRG LIGFRGEFIR ATRGEGIMSH SFFEYRPSVG 
DFEQRRNGVL ISFEEGVATF YSLKNAEDRG QFFITPGAKV YKGMIIGENK RPQDLELNIC 
RAKQLTNMRS AGAEELDQLQ SPIEMTLERA LEYIGPGEML EVTPESIRLR KIKAKKNL