| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_07761 |
|---|
| Symbol | gadB |
|---|
| ID | 4781217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | + |
|---|
| Start bp | 708551 |
|---|
| End bp | 709921 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640084051 |
|---|
| Product | pyridoxal-dependent decarboxylase family protein |
|---|
| Protein accession | YP_001014599 |
|---|
| Protein GI | 124025483 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0845725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0349206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACCCTT TTGCTTCTCC TCAAAACTTA GATAAAGAAC TGCGTTCTTT ACTTGCTCAA
GTCTCAAGTA ATCTTTGTGA TTGGTTTGCT GAATCAGCCA GTAAAGGTCC AATGCCCTAT
TCATTTGAAT TGCCAGAGGT CTATCCAGCA AAAGAAGGTG TTTCTAATGA TGTTTTACTG
AGTGAACTTC AATTACTAAT GGATGGTTCC TATCGACCAT CGCATCCAGG ATCTCTTGCT
CATTTGGACC CACCTCCTCT ATCAGCTTCA ATAGCAGGAG AACTAATTTG TGCAGGTTTA
AATAATAATC TTTTAGCCGA TGAGCTATCC CCTAGCTTGT CTTCCTTGGA GAGAAACTTA
TGTAAATGGT TTTGTCACAA GCTTGGTCTT GGTGATTTGT CTGGAGGTGT AGCGGCTAGC
GGTGGGAGTT TGAGTAATTT AATGGCTTTA GTAATGGCAA GAAATAATTC TGGGCTAGAA
ACTGATCCTA AGGCTGTTTT TTTTGCAAGT CATGATTGTC ATGTTTCATT CTCAAAAGCT
TTTAGGATTA TGGGGCTGAA ACAGGAATCT CTACAAAAAG TTTCTACAGA TGAAAATGGT
GCATTAAATA TTTCTAGTTT AAGAACAAGT TTAAATAAAA TAAAATCTCA GGGTAAGAAA
TGCTTTGCTG TCGTAGCGAC AGCTGGAACC ACTGTAAGAG GGGCTATTGA CCCACTTTCT
GAGATCGCTA AATTTTGTAA AAAAGAGAAT GTTTGGTTTC ATGTTGATGG CTCAATTGGT
GGTATTTATG GTTTATCAGA AATGACTTCA GAAATTGTTC AAGGCTTAGG TTTCGCTGAC
TCTTTAACTA TTAATCCACA GAAATTATTG GGAATCCCAA AAACTTCTTC TTTATTACTC
GTAGCCAATA AAAACCATCT TTCTTCTACA TTTTCAACCG GACTCCCTTA TGTCGAACCA
ATTTCAGGAA ATGACTTTCA TGGAGGAGAG CTTGGAATCC AAGGTACTAG ATCCGCAGAG
ACATTGAAAT TGTGGATTGG ATTAAGACAA TTGGGTGAAG AGGGTATTGA AAAAATACTT
TTGGGCTCAA TTAAAAGAAG ATGTTATTTA GAATCTATAA TTGACCGATC AAAATTTAAA
ATAATATCAG GACCTCTTCA TCTTTTAGCT TTTACACCTA TTAATTATAG TTCTTCTCAA
GCATCCGATT GGTCTCTAAA AACAAGAAAT TTTTTGTTAG CTAATAAGTT TATGCTCTCT
AGGCCAATGT ATGGAGATAG ATATTATTTA AAAGCTGTTA TGGGGAACCC TAATACTAAA
TTTGATGATT TAAAAATGTT GGCTAATCTT ATTAATCATT CAATTAGTTG A
|
|---|
| Protein sequence | MDPFASPQNL DKELRSLLAQ VSSNLCDWFA ESASKGPMPY SFELPEVYPA KEGVSNDVLL
SELQLLMDGS YRPSHPGSLA HLDPPPLSAS IAGELICAGL NNNLLADELS PSLSSLERNL
CKWFCHKLGL GDLSGGVAAS GGSLSNLMAL VMARNNSGLE TDPKAVFFAS HDCHVSFSKA
FRIMGLKQES LQKVSTDENG ALNISSLRTS LNKIKSQGKK CFAVVATAGT TVRGAIDPLS
EIAKFCKKEN VWFHVDGSIG GIYGLSEMTS EIVQGLGFAD SLTINPQKLL GIPKTSSLLL
VANKNHLSST FSTGLPYVEP ISGNDFHGGE LGIQGTRSAE TLKLWIGLRQ LGEEGIEKIL
LGSIKRRCYL ESIIDRSKFK IISGPLHLLA FTPINYSSSQ ASDWSLKTRN FLLANKFMLS
RPMYGDRYYL KAVMGNPNTK FDDLKMLANL INHSIS
|
|---|
| |