Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_06321 |
Symbol | |
ID | 4779460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | - |
Start bp | 572599 |
End bp | 573522 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640083910 |
Product | type II alternative sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_001014459 |
Protein GI | 124025343 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.903812 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTTCTT TAAGCGACTT TCTTGGAGAA ATAGGAAGAC ACGAATTGCT CACACCAGAG CAAGAACTCA CTTTGGGTAG AGAAGTGCAA GCAATGGTTG CACTTAATGA ACGCTGCCAA CAAGCTGGAG GTAATGGACC AGAGTGTGAA TATTCAAGCG CAGAGAAGAA AAGATTTAAG GCAGGTGAAC GGGCCAAGAA TCAAATGATC ACAGCAAATC TGAGGCTTGT TGTGAATTTG GCCAAGCGCT ATCAAGGCAA AGGGCTTGAC CTTCTTGATT TAATTCAAGA GGGCACCTTA GGATTAACAA GAGCTGTTGA GAAGTACGAT CCCAAAAGAG GTCATCGATT TTCAACTTAC GCTTACTGGT GGATTAGGCA AGGACTAAAT AGAGCGCTTT CAACGCAAAG TAGAACAATA CGAATCCCTG TAAACATAAA TGAAAAACTA ACAAAACTTC GTGCTGCCAA GTCTCGACTA ATGCAAGAGC TTGGGGTTCA TCCCTCAACT AACCAGATAG CCATACAAAT GAAAATTCCT TTAGAGGAAG TAGAAGAATT ACTTGCATGT GAGCTAAGAA GTATCACAGT GAGCTTGCAA GGGGCAGTCA AATCTAAAGC AGATCCCTCT GAGCTTGTCG ATATTCTTCC AAGTGAAGAA GTACCTCCCA TGGAACTAGC TGAATTAGCA GAGAGAAGTG CATCAGCCTG GTCGTTATTG GACAAATCAA ATCTCACACC AAAAGAGAGA ACGATACTAA GCCTGCGATT TGGCCTAGAT GGATCGAACG AATGGAGAAC TCTAGCCGAA GTCGCCAGAC AAATGAATTG CAGCAGGGAA TATTGCAGAC AAGTAGTTCA ACGTGCATTA AGAAAGTTGA GAAAAACAGG GATTCAAAGT GGTCTTTTAG AGACAAGTAT TTAA
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Protein sequence | MSSLSDFLGE IGRHELLTPE QELTLGREVQ AMVALNERCQ QAGGNGPECE YSSAEKKRFK AGERAKNQMI TANLRLVVNL AKRYQGKGLD LLDLIQEGTL GLTRAVEKYD PKRGHRFSTY AYWWIRQGLN RALSTQSRTI RIPVNINEKL TKLRAAKSRL MQELGVHPST NQIAIQMKIP LEEVEELLAC ELRSITVSLQ GAVKSKADPS ELVDILPSEE VPPMELAELA ERSASAWSLL DKSNLTPKER TILSLRFGLD GSNEWRTLAE VARQMNCSRE YCRQVVQRAL RKLRKTGIQS GLLETSI
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