| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_05531 |
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| Symbol | |
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| ID | 4780318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | - |
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| Start bp | 500947 |
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| End bp | 502209 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640083830 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001014380 |
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| Protein GI | 124025264 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.417716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAGG AAAAACAGAC ATCTAAAAAT ATTTCTATTA ATCAGGATCC TAAAAACAAT
TCCAAAAAAA TTAAAAAAAC AGCTGCCAAA GTAAACGTGA CTAAAGAAAC CCAAACTCTT
CCTCAAGAAT CTTCAAATGA TCTAAAAATT GATTTAGATC TAGAGGCGGA TAAATTAATT
GCTGAAGCAA ATAAAGTGCC TGAAGCCGAT ATCGATCTAG ATGATGATGA CGATAATGCC
TCTGTGCTAT CAAGTGCTCA AGAAGCAGCA GCTAAAGCCT TAGCAAGTAT AAAAATAGGG
CCAAAGGGTG TTTATACAGA AGACTCGATT AGAGTTTATC TACAAGAGAT TGGTCGTATA
AGACTTCTCA GGCCAGACGA AGAAATTGAA TTAGCCAGGA AGATAGCAGA TCTTCTTCAA
TTAGAGGAAG AAGCTGCACA ATTTGAAAGT GAGAATGGAC ATTTCCCATC AGTCAAAGAA
TGGGCAGTTC TTGCAGACAT GCCATTAACT CGCTTCCGAA GGCGATTAAT GCTAGGCAGA
CGAGCAAAAG AAAAAATGGT GCAATCAAAT CTACGACTAG TAGTTTCAAT TGCCAAGAAA
TATATGAATA GAGGTTTGTC TTTTCAAGAT CTTATTCAAG AAGGAAGTCT TGGTCTAATT
CGTGCAGCTG AAAAATTTGA TCATGAGAAA GGATATAAAT TCTCAACTTA CGCTACTTGG
TGGATAAGGC AGGCTATCAC TAGAGCAATT GCAGATCAAA GCAGAACAAT TCGTTTGCCT
GTGCATTTAT ACGAAACAAT TTCAAGGATC AAGAAAACCA CTAAAGTTTT AAGTCAAGAG
TTTGGAAGGA AACCAACCGA GGAAGAAATC GCCGAAAGCA TGGAAATGAC GATTGAAAAA
CTCAGATTCA TTGCAAAAAG CGCTCAGCTC CCCATTTCTC TTGAGACCCC TATTGGGAAA
GAAGAAGATT CTAGACTTGG TGACTTTATT GAAGCAGACA TAGAAAATCC TGAACAAGAT
GTGGCAAAAA CCTTATTAAG AGAAGATTTG GAGGGTGTTC TCGCTACATT AAGTCCAAGA
GAGAGGGATG TTCTAAGACT TCGTTATGGC TTAGATGATG GAAGAATGAA AACCCTTGAA
GAAATTGGAC AAATTTTTGA TGTAACTAGA GAGAGAATCA GACAAATAGA GGCTAAGGCT
CTCAGAAAAC TCCGCCATCC AAACAGAAAC GGGGTTCTTA AAGAATATAT CAAGCTAAAT
TAA
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| Protein sequence | MLKEKQTSKN ISINQDPKNN SKKIKKTAAK VNVTKETQTL PQESSNDLKI DLDLEADKLI
AEANKVPEAD IDLDDDDDNA SVLSSAQEAA AKALASIKIG PKGVYTEDSI RVYLQEIGRI
RLLRPDEEIE LARKIADLLQ LEEEAAQFES ENGHFPSVKE WAVLADMPLT RFRRRLMLGR
RAKEKMVQSN LRLVVSIAKK YMNRGLSFQD LIQEGSLGLI RAAEKFDHEK GYKFSTYATW
WIRQAITRAI ADQSRTIRLP VHLYETISRI KKTTKVLSQE FGRKPTEEEI AESMEMTIEK
LRFIAKSAQL PISLETPIGK EEDSRLGDFI EADIENPEQD VAKTLLREDL EGVLATLSPR
ERDVLRLRYG LDDGRMKTLE EIGQIFDVTR ERIRQIEAKA LRKLRHPNRN GVLKEYIKLN
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