| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_04911 |
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| Symbol | topA |
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| ID | 4781077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 445813 |
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| End bp | 448719 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640083766 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001014318 |
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| Protein GI | 124025202 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.624674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACTG ACCATACTCT GGTAATTGTT GAAAGTCCTA CAAAGGCAAA AACTATTAGA
GGGTTTTTGC CTAAGGACTT TCAGGTTCTT GCGTCAATGG GTCACATAAG AGACTTGCCT
AACAATGCAT CTGAGATCCC TGCGAAGCAC AAAGGCGAAA AGTGGGCAAC GATTGGAGTT
AATACAACTG CTGATTTTGA TCCTTTGTAC GTCGTACCCA AAGACAAGAA AAAAATTGTC
AAGGAATTAA AACAATCTTT GAAGGGTGCT AGTGAATTGT TGCTTGCGAC TGATGAAGAT
AGAGAAGGAG AAAGTATAAG TTGGCATTTA ATGAATGTGC TTGACCCGAA AATCCCTGTG
AAGAGGATGG TCTTTCATGA GATAACTAAA GAAGCTATTT CCAAAGCTCT ATCGAAAACA
AGAGCAATTG ATATGGAATT AGTTCATGCC CAAGAGACAA GGAGGATCTT AGACAGATTA
GTTGGGTACA CGCTTTCTCC TCTTTTATGG AAGAAAGTTT CATGGGGGTT ATCTGCAGGA
AGAGTTCAAT CAGTTGCAGT AAGGTTGCTA GTTCTGAGAG AGAGAGCAAG GAGAGCTTTC
AAAAGCGGGA GTTATTGGGA CTTAAAAGCA AAATTAGAGA AAGAAGGTAG TGAATTTGAG
GTGAAAATGA CCTCAATTGG TGGAAAAAGA ATTGCTACAG GTAGTGATTT TGATGAGTCA
ACGGGATTAT TGAAATCTGG CCGAAATGTC ATATTACTCA AGGAAGAGGA GTCTAAGGAA
CTTGCAAAAA ATTTAACTAC TGATAAATGG AAAGTTGTTA ATGTCGAGGA AAAGCCGTCA
ATCCGTAAAC CAGTTCCTCC TTTTACAACA AGCACATTAC AACAAGAGGC TAATAGAAAA
CTTCGATTAT CAGCTAGGGA GACTATGAGA TGTGCTCAGG GTTTGTATGA AAGAGGTTTT
ATTACATATA TGAGAACAGA TTCTGTTCAT CTGTCTGATC AGGCAATTAA TGCCTCACGA
AATTGTGTTG AATCAAAATA TGGTGTTGAA TATTTAAGTA AAAAGCCCCG ACAATTCTCC
AATAAGACGA GAAATGCTCA AGAAGCCCAT GAAGCAATAC GTCCTTCTGG TGAGAGCTTT
AAAACACCCA AAGAGTCAAA CTTGCAAGGT AGGGATCTTT CTTTATACGA ACTTATTTGG
AAACGGACAG TTGCTAGTCA AATGGCCGAT GCAAGGTTGA CAATGCTTGG AGTCGAATTA
AAAGCATCGG ATGTATCTTT TCGGGCTAGT GGTAAACGAA TAGATTTCCC TGGATTCTTT
AGAGCTTATG TTGAAGGTAC TGATGATCCT GATAGTGCAC TTGAAGGACA AGAAGTGCTT
TTGCCTAAAT TAGCGGTAGG AGATTCTCCA ACAGCTAAGA ATGTAGAGGC ATTGGGGCAT
CAGACTCAAC CTCCAGCTAG ATATAGCGAA GCTTCATTAG TTAAAACACT TGAGAAAGAA
GGCATAGGTC GTCCGTCAAC TTATGCAAGC ATTATAGGAA CAATTGTAGA TCGAGGTTAT
TCAGTCCTAA ATAACAATTC TTTAACTCCA AGCTTTACAG CATTTGCTGT GACGGCACTT
CTTGAAGAAC ATTTTCCTGA TCTTGTAGAT ACCAGTTTTA CTGCTCGAAT GGAATCTACA
CTTGATGAGA TCTCAACAGG AAAAGTGAGT TGGCTTCCAT ACCTTAAGGG CTTTTATAAG
GGTGATACTG GCCTAGAGAA TCAGGTGCAA CAAAGGGAAG GGGATATTGA TGGAGGCGAG
TTTAGAGCTG TTTCCTTGGA GGGACTTTCA TCTCTAGTTA GGTTGGGCAA ATTTGGAACA
TATCTGGAAT CAAAGCAACT GGGTGAAAAT GGCAAGCCCA TAACAGCTAC TCTTCCACAG
GAAATTACTC CCGCAGATTT GGATGAGGAT ATCGCAGAGA TGATTTTAAA ACAAAAAGCT
GAGGGTCCTG AATCACTTGG GGTTGACCCT GATAGTGGAC AGAATCTATA TCTATTAAAT
GGTAGATATG GTCATTTTGT TCAAAGGGGA TTAGTAGTCG AATTGAAAGA TCTTGGGATT
CCAAAAGGTA AGAAGAAATT AGGAAATCTT CGCTTGTTCA AAAGCAGTCA ATATGGACTC
TATTTGAAGC AGGATTCATC AAAGGTTCAG GTTTTGTTAC CAGAGAATAT AAAAGAGGAA
GAGATAGATG TTGAAAAAGC ACTTGAATAT TTAGATGATA AATCATTAAA AAAAGCTCCA
AATCCAAAAA GGACTTCCTT ACCAAAGAGT CTAAAACCAG AGGACTTGAC ATTTGAGAAG
GCCCTTGGAT TAATCCAATT ACCACGTCTA CTTGGAGAGC ACCCAGAGGG AGGTAAAGTT
CAATCAAGCT TGGGTAGATT TGGTCCGTAT GTGGTTTGGA GTAAAAATGG TGGTGAAAAA
GATTATCGCT CAATTAAGGG GGAAGATGAC GTTCTTCAAG TAAGCCTAGA AAGAGCTCTT
GAGCTTTTAT CAATACCAAA AAGAGGAAGA GGCGGAAGAA CTGCGTTGAA AGAACTTGGT
ATCCCAGATG GAGAAAAAGA AACTATCCAA TTATTTGATG GTCCTTATGG TTTATATGTT
AAACAGGGTA AAGTAAATGC TTCTCTACCA GAGGGAAAAA CCGCTGAAGA TATTACTATT
GAGGTAGCTA TTGAATTATT GGCAGCTAAG AAATCAAGTA AAAAGACAAC ATCTAAGAAA
AGAAAATCTA CACAAAAGAC AACCAAGTCA ACAAAGAAAG ATTTAAACTC ATCAGCATCA
AAAAAAAGTA GTACTCAAAA AGCGCCCTCT ACAACTAAAA CAGGACGTCT AAGAGCCAGT
AAAGTAAGGG TAATTAAAAC AAAATAA
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| Protein sequence | MPTDHTLVIV ESPTKAKTIR GFLPKDFQVL ASMGHIRDLP NNASEIPAKH KGEKWATIGV
NTTADFDPLY VVPKDKKKIV KELKQSLKGA SELLLATDED REGESISWHL MNVLDPKIPV
KRMVFHEITK EAISKALSKT RAIDMELVHA QETRRILDRL VGYTLSPLLW KKVSWGLSAG
RVQSVAVRLL VLRERARRAF KSGSYWDLKA KLEKEGSEFE VKMTSIGGKR IATGSDFDES
TGLLKSGRNV ILLKEEESKE LAKNLTTDKW KVVNVEEKPS IRKPVPPFTT STLQQEANRK
LRLSARETMR CAQGLYERGF ITYMRTDSVH LSDQAINASR NCVESKYGVE YLSKKPRQFS
NKTRNAQEAH EAIRPSGESF KTPKESNLQG RDLSLYELIW KRTVASQMAD ARLTMLGVEL
KASDVSFRAS GKRIDFPGFF RAYVEGTDDP DSALEGQEVL LPKLAVGDSP TAKNVEALGH
QTQPPARYSE ASLVKTLEKE GIGRPSTYAS IIGTIVDRGY SVLNNNSLTP SFTAFAVTAL
LEEHFPDLVD TSFTARMEST LDEISTGKVS WLPYLKGFYK GDTGLENQVQ QREGDIDGGE
FRAVSLEGLS SLVRLGKFGT YLESKQLGEN GKPITATLPQ EITPADLDED IAEMILKQKA
EGPESLGVDP DSGQNLYLLN GRYGHFVQRG LVVELKDLGI PKGKKKLGNL RLFKSSQYGL
YLKQDSSKVQ VLLPENIKEE EIDVEKALEY LDDKSLKKAP NPKRTSLPKS LKPEDLTFEK
ALGLIQLPRL LGEHPEGGKV QSSLGRFGPY VVWSKNGGEK DYRSIKGEDD VLQVSLERAL
ELLSIPKRGR GGRTALKELG IPDGEKETIQ LFDGPYGLYV KQGKVNASLP EGKTAEDITI
EVAIELLAAK KSSKKTTSKK RKSTQKTTKS TKKDLNSSAS KKSSTQKAPS TTKTGRLRAS
KVRVIKTK
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