| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_04561 |
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| Symbol | pdhC |
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| ID | 4779657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 417220 |
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| End bp | 418590 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640083733 |
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| Product | branched-chain alpha-keto acid dehydrogenase subunit E2 |
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| Protein accession | YP_001014285 |
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| Protein GI | 124025169 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.852087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACTC ATGACATTTT TATGCCTGCT TTAAGTTCAA CGATGACTGA GGGCAAAATA
GTTGAGTGGC TAAAAAAACC TGGAGATAAA GTTGAAAGAG GTGAGTCAGT TTTAGTTGTT
GAGTCAGATA AAGCTGATAT GGATGTTGAG TCTTTCCAAG ATGGCTTTCT TGCTTCGATT
GTGATGCCTG CAGGCAGCTC TGCACCTGTT GGAGAGACAA TCGGATTGAT CGTTGAGACA
GAAGATGAGA TCGCTGCGGC TCAAGCAAAT TCGCCTTCTC CTTCCCCTCA ATCAGGAAGT
CAAGAAAAAG ATAGTTCATC GCCTCAAGTT CAAGAAAAAC AAGCCTCTGT CGACTCTCCT
AAAGCAACAG TAGTTACAAA GGCATCTCCT GCACCTCTTG TTTCAGAATC CTCTGTAAAT
CAGGATCAGT TTTTAAATGA TGGTCGAATA GTCGCTTCCC CAAGAGCTAA AAAACTTGCT
TCTCAAATGG GAGTGGATTT GGCAACTGTT AGGGGCTCAG GACCTCATGG ACGAATACAA
GCTGAGGATG TTCAAAGTGC AAAAGGGCAA CCCATAAGCG TTCCTTGGAT TGCAGAAAGT
AATGCTCCGG CGAAAATAGT TTCTGATGTG CCTCGCGTAG AAAAAAAATC TGTTGACGCT
GGTAAGCCAC CTGCTCCAGG GAAAAGTTTT GGATCTAGAG GGGAAACAAT TGCATTTAAT
ACTCTTCAAC AAGCTGTAAA TCGGAACATG GAGGAAAGTT TAAATACTCC TTGTTTCAGA
GTCGGATATT CAATTCTTAC TGATGAATTG GATGATCTTT ATAAACAAGT TAAACCTGAT
GGAGTAACTA TGACTGCTTT ACTTGCTAAA GCAGTTGGCT TAACGCTGGC TAGACACCCC
CAGGTGAATG CAGCTTTTAG TTCTGAGGGG ATTGCCTATC CTTCACAAAT AAATGTAGCC
GTTGCAGTTG CGATGGAGGA CGGAGGGTTG ATAACTCCAG TGCTGCAAAA TGCTGATAAG
ACGAGCCTTA CTGATTTATC CCTACAATGG GCTGATCTTG TTAAGCGAGC TAGGAATAAG
CAATTAGAAC CGCAAGAATA TAGCAGTGGA ACGTTTACAC TCTCGAATCT AGGTATGTTT
GGAGTGGATC GTTTTGATGC AATTCTGCCC CCAGGGACTG GAGCAATTTT AGCGGTAGGA
GCTTCATTGT CTAAAGTTGT TGCTTCTAAA GATGGTTCGA TTTCAATCAA AAAACAAATG
CAAGTAAATC TTACCGCTGA TCACAGAGTG ATATATGGGG CTGATGGAGC ACTATTCCTC
AAGGATTTGG CATACTTAAT TGAAAAGAAC CCTTATAGCC TCTCGTCTTG A
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| Protein sequence | MATHDIFMPA LSSTMTEGKI VEWLKKPGDK VERGESVLVV ESDKADMDVE SFQDGFLASI
VMPAGSSAPV GETIGLIVET EDEIAAAQAN SPSPSPQSGS QEKDSSSPQV QEKQASVDSP
KATVVTKASP APLVSESSVN QDQFLNDGRI VASPRAKKLA SQMGVDLATV RGSGPHGRIQ
AEDVQSAKGQ PISVPWIAES NAPAKIVSDV PRVEKKSVDA GKPPAPGKSF GSRGETIAFN
TLQQAVNRNM EESLNTPCFR VGYSILTDEL DDLYKQVKPD GVTMTALLAK AVGLTLARHP
QVNAAFSSEG IAYPSQINVA VAVAMEDGGL ITPVLQNADK TSLTDLSLQW ADLVKRARNK
QLEPQEYSSG TFTLSNLGMF GVDRFDAILP PGTGAILAVG ASLSKVVASK DGSISIKKQM
QVNLTADHRV IYGADGALFL KDLAYLIEKN PYSLSS
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