| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_04021 |
|---|
| Symbol | rps1a |
|---|
| ID | 4781090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | - |
|---|
| Start bp | 371332 |
|---|
| End bp | 372441 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640083671 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001014231 |
|---|
| Protein GI | 124025115 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.337887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA ATCCAGCAAG CAAAATTGAA GAAAAAAATC CTGAAAAAGA GACATCTATA
CCTGAAGAAA CTGTTTCAAA TTCCACAAGT GCAGAGTTTG AAGAAAATTC AATTAGTGAA
TTAAAAGAAG ACGATATTCC CAAAAACATT CCTGCTGCTG ATGACTCTTC AAGCAGAATT
AATAAGAGTG ATCTTGAAAG TGCAGGTTTC ACACTTGATG AATTCGCATC TTTACTAAGT
AAATACGACT ACAATTTTAA ACCTGGTGAC ATAGTCAATG GAACAGTTTT TGCTCTTGAA
TCGAAAGGAG CAATGATTGA CATTGGAGCG AAAACAGCTG CTTTTATGCC TATGCAAGAA
GTCTCAATAA ATAGGGTCGA GGGTCTGAGT GATGTTTTAC AGCCCTCAGA AATTAGAGAA
TTTTTTATAA TGACTGAGGA AAATGAGGAT GGTCAATTAT CCTTATCTAT CAGGAGAATT
GAGTATCAAC GAGCTTGGGA AAGAGTTAGA CAATTACAAA AAGAAGATGC AACAATTTAT
TCCGAGGTTT TTGCTACAAA TAGAGGCGGT GCACTTGTTC GAGTTGAAGG GCTCAGAGGC
TTTATTCCTG GATCACATAT AAGCACTAGA AAGGCGAAAG AAGAACTTGT TGCTGATTTC
TTGCCATTGA AATTCTTAGA AGTTGATGAA GAAAGGAATA GGCTTGTTTT AAGTCATCGC
AGGGCTTTAG TCGAAAGAAA AATGAATCGC CTTGAAGTTG GAGAAGTTGT TGTAGGAGCA
GTCAGAGGAA TTAAACCTTA TGGAGCATTT ATAGATATTG GTGGCGTAAG TGGACTTCTT
CACATCTCTG AAATAAGCCA TGAGCATATT GAAACTCCTC ACTCCGTATT AAATGTCAAT
GATCAAATGA AGGTCATGAT TATTGATCTA GACGCTGAAA GAGGAAGAAT TTCTCTATCG
ACGAAAGCGC TTGAACCAGA ACCTGGAGAC ATGCTGACTG ATCCTCAAAA AGTTTTTGAC
AAGGCTGAAG AGATGGCAGC AAGATACAAA CAAATGCTTC TTGAGCAAGC AGAAGAAGGA
GAAGATCCTA TTGCAGTAAT GACTATTTGA
|
|---|
| Protein sequence | MSENPASKIE EKNPEKETSI PEETVSNSTS AEFEENSISE LKEDDIPKNI PAADDSSSRI
NKSDLESAGF TLDEFASLLS KYDYNFKPGD IVNGTVFALE SKGAMIDIGA KTAAFMPMQE
VSINRVEGLS DVLQPSEIRE FFIMTEENED GQLSLSIRRI EYQRAWERVR QLQKEDATIY
SEVFATNRGG ALVRVEGLRG FIPGSHISTR KAKEELVADF LPLKFLEVDE ERNRLVLSHR
RALVERKMNR LEVGEVVVGA VRGIKPYGAF IDIGGVSGLL HISEISHEHI ETPHSVLNVN
DQMKVMIIDL DAERGRISLS TKALEPEPGD MLTDPQKVFD KAEEMAARYK QMLLEQAEEG
EDPIAVMTI
|
|---|
| |