| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_18551 |
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| Symbol | sqdB |
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| ID | 4720433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9515 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008817 |
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| Strand | + |
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| Start bp | 1642806 |
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| End bp | 1643999 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640081555 |
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| Product | sulfolipid (UDP-sulfoquinovose) biosynthesis protein |
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| Protein accession | YP_001012169 |
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| Protein GI | 123967088 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.33868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGTAA TTGTTCTTGG CGGAGATGGT TTTTGCGGTT GGCCTTGTGC GGTAAATTTA
GCTGAACAAA ATCATGAAGT AATTATAGTT GACAACCTAA GTCGAAGAAA AATAGATATT
GATCTTGAAG TGGAGTCTTT AACCCCAATT TCATCAATAA ACGAAAGACT TTCTGCGTGG
GAAGAGACTG GTGGTAAACC AATAAAATTT CTCAATATTG ATCTTTCTAA ACAATACCAA
AAATTACTTA ATTTACTTAT TGAGGAAAAA CCTGATTCGA TTGTACATTT TGCTGAACAA
AGAGCCGCAC CTTACTCAAT GAAATCAAGT TATACGAAAA GATATACAGT TGATAATAAT
GTCAATGGTA CACACAATTT ACTTGCTGCA ATTGTAGAAA GTAATTTAGA TATTCATATC
GTTCATTTAG GAACTATGGG TGTATATGGA TATGGATCAC ATAGAGGCGC AACAATCCCT
GAAGGCTATT TAAAAGTTGA AGTTCCTCAA CCAGATGGAA GTCGTTTTGA AGAAGAAATT
CTTCATCCTG CAAGTCCGGG CAGTGTTTAT CATATGACAA AAACATTAGA TCAATTATTA
TTTCTTTATT ACAATAAAAA CGATTTAATT AGAATCACAG ATCTTCATCA AGGGATTGTT
TGGGGCACCA ATACAGAAAC AACATTAAAA GATCCAAGAT TGACAAATAG ATTTGATTAC
GATGGCGATT ATGGTACTGT TCTTAATAGA TTTCTAATGC AAGCAGCTAT AGGATATCCA
TTAACTGTCC ATGGAACAGG AGGACAAACA AGAGCTTTTA TACACATAAA AGATTCAGTG
AAATGTGTTC AACTTGCTTT AGAAAATCCT CCAGAATCTG GAGAAAGAGT CAAAATTTTT
AATCAAATGA CAGAAAGTCA TCAGGTTGGT GAATTAGCTA AAAAAGTTGC TTCGCTTACT
GGAGCCGAAA TTAATTATTT ACCAAATCCT CGAAATGAAG CAGTCGAAAA TGATTTAATA
GTTGATAACA AGTGTTTCAT AGAATTAGGG CTTAATCCCA CCACACTTGA TAATGGCTTA
TTAGAAGAGG TTCTTGAAGT AGCTAAAAAA TATTCTATGA GATGTGATAA AAAAAGAATT
CCTTGTATTT CAACTTGGAC GGAGAAACAA GCTAAAGCAA TAAAAAATAA TTAA
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| Protein sequence | MKVIVLGGDG FCGWPCAVNL AEQNHEVIIV DNLSRRKIDI DLEVESLTPI SSINERLSAW
EETGGKPIKF LNIDLSKQYQ KLLNLLIEEK PDSIVHFAEQ RAAPYSMKSS YTKRYTVDNN
VNGTHNLLAA IVESNLDIHI VHLGTMGVYG YGSHRGATIP EGYLKVEVPQ PDGSRFEEEI
LHPASPGSVY HMTKTLDQLL FLYYNKNDLI RITDLHQGIV WGTNTETTLK DPRLTNRFDY
DGDYGTVLNR FLMQAAIGYP LTVHGTGGQT RAFIHIKDSV KCVQLALENP PESGERVKIF
NQMTESHQVG ELAKKVASLT GAEINYLPNP RNEAVENDLI VDNKCFIELG LNPTTLDNGL
LEEVLEVAKK YSMRCDKKRI PCISTWTEKQ AKAIKNN
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