Gene P9515_17931 details

Gene Information

• Locus tag: P9515_17931
• Symbol: rimM
• ID: 4719962
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9515
• Kingdom: Bacteria
• Replicon accession: NC_008817
• Strand: +
• Start bp: 1579439
• End bp: 1579978
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 25%
• IMG OID: 640081492
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001012107
• Protein GI: 123967026
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAATC ATGATGAATG GTTGATTGTT GGATTAATAA CATCTCCTCA AGGAATAAAT 
GGGAAAATTA AAGTTAAGTC TCTTAGTGAT TTTGAAGAAA GATTTACAAA ACCTGGTATT 
AGATGGATAC AAAAAGAAAC CGAGTCTCCT AAGAAATTAC AACTTATATC TGGTTTCCAA 
AAACCTGGCA AAGAATCTTT CGTAATTACA TTTAAAGAAA TAAAAAATAG AAATGAAGCA 
GAAAAATTAA AAGGATATAA GTTACTTGTA AAAGTTGATG AAATTCCTAA GTTAAATAAA 
AATGAATTTC ACTTGACCGA ACTAATGAAT TTAAAAGTGA AAATTTTAGA AAATAACAAA 
TTAAAAATTA TAGGTAAAGT TGTAAATTTA GAAAACGAAA AAAATAATTT ACTTGTAATT 
AAACTTCTAA CAAATGATAA AGAGGTTCTT GTCCCATTTG TTAAGGAAAT TATTCCAGAA 
ATTGATATAA AGAATAAATT TTTAATAATT ACTCCTCCGC CAGGCCTTTT AGAATTATGA 

 

Protein sequence

MINHDEWLIV GLITSPQGIN GKIKVKSLSD FEERFTKPGI RWIQKETESP KKLQLISGFQ 
KPGKESFVIT FKEIKNRNEA EKLKGYKLLV KVDEIPKLNK NEFHLTELMN LKVKILENNK 
LKIIGKVVNL ENEKNNLLVI KLLTNDKEVL VPFVKEIIPE IDIKNKFLII TPPPGLLEL