| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_17021 |
|---|
| Symbol | psaB |
|---|
| ID | 4720211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | - |
|---|
| Start bp | 1499343 |
|---|
| End bp | 1501571 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640081395 |
|---|
| Product | photosystem I P700 chlorophyll a apoprotein A2 |
|---|
| Protein accession | YP_001012016 |
|---|
| Protein GI | 123966935 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01336] photosystem I core protein PsaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAA AATTTCCAGC ATTTAACCAG GGTCTAGCTC AGGACCCAAC CACCCGCCGA
ATATGGTACG GCATAGCTAC TGCTCATGAC TTTGAGAGTC ATGATGGGAT GACAGAAGAA
AAGCTTTACC AAAAGTTGTT TTCTACGCAT TTTGGTCATT TAGCAATTAT TGCTCTTTGG
GTAGCTGGTA ATCTATTTCA TATTGCTTGG CAAGGTAATT TTGAGCAATT TGTACTTGAT
CCAACCCATG TTCGTCCTAT CGCTCATGCT ATTTGGGACC CTCACTTCGG TTCTGGTATT
ACAGAAGCAA TGACTCAGGC AGGAGCCGAT GGCCCAGTAA ATATTGCTTA TTCAGGTTTA
TATCATTGGT GGTACACCAT AGGCATGAGA ACAAATGAGC AATTGTTTCA AGCCTCAATA
TTTATGAGTA TTTTGGCTTG TTGGACATTG TTTGCTGGAT GGTTACATTT ACAACCAAAA
TTTAGACCTT CACTTGCCTG GTTTAAAAAT AACGAATCTA GATTAAATCA TCATCTTGCT
GTTTTATTTG GTTTTAGTAG TATTGCTTGG ACAGGACACT TAGTTCACGT TGCTATTCCT
GAATCTAGAG GTATTCATGT AGGTTGGGAT AATTGGTTAA CAGTACTACC TCATCCAGCC
GGCTTAACTC CTTTCTTTAC ACTTAATTGG GGTGCATATG CCCAGAATCC GGATTCATTA
GAACAAGTAT TTGGTACGGC AGAGGGAGCG GGTACAGCAA TATTTACTTT CCTAGGAGGA
CTTCATCCTC AAAGTGAAGC ATTATGGTTA ACTGACATAG CTCATCATCA CATTGCAATA
GGTACTGTAT TTATAATCGC CGGACATATG TATAGAAATA CTTTTGGAAT CGGACATAGT
TTAAAAGAAA TTACAGAAGC GCATAATACA AGACATCCTC TTGATCCTCA CAAAGGAAGT
TTTGGGATTA ATCACGATGG TCTTTATGAA ACTGTTACTA ATTCGCTTCA CTTCCAACTT
GGTTTAGCTC TAGCAGCTCT TGGAGTAGCC ACATCATTGG TGGCTCAACA TATGGGAGCT
CTTCCTTCAT ATGCTTTTAT AGCAAGAGAT TACACTACAC AGTCAGCTTT ATATACTCAT
CACCAATATA TAGCGATGTT TTTAATGGTT GGTGCTTTTG CTCATGGTGC AATATTCTTT
GTCAGAGATT ATGATCCTGA ATTAAATAAA GATAATGTAT TAGCTCGTGT ACTAGGAACT
AAGGAAGCTC TTATTAGTCA TTTAAGCTGG GTGACTATGA TCTTGGGTTT TCATACATTA
GGAATATATG TACATAACGA TGTTGTTGTA GCTTTTGGAA ATCCTGAAAA ACAAATTTTA
ATCGAACCAG TATTTGCTCA GTTCGTGCAG GCAGCTCAAG GAAAGATGAT GTATGGTTTT
AACGCACTGC TTTCTGATCC TACAAGTGCA GCTAGTGTCG CTGCAAATTC TTTACCGGGA
AATCATTACT GGATGGATTT GATTAATAGA CAAGATGCTT TAAGTGCTTT TTTACCCATT
GGACCAGCAG ATTTCTTGGT TCATCATGCT ATTGCTCTTG GACTTCACAC AACTGCACTA
ATTCTAATTA AAGGGGCTTT AGATGCTAGA GGCACTAAGC TTATTCCAGA CAAGAAAGAT
TTAGGTTATG CATTCCCATG TGATGGACCA GGGAGAGGAG GTACTTGTGA CAGCTCATCT
TGGGACGCCA TGTATCTAGC AATGTTCTGG GCATTAAACT TGATAGCATG GGTAACTTTT
TACTGGCATT GGAAACATTT AGCAATTTGG CAAGGTAATG TTGCTCAATT TAATGAGTCT
GGAACTTACT TAATGGGTTG GTTTAGAGAT TATCTATGGC TAAACTCAGC TCAATTAATT
AATGGATATA ATCCATTCGG CGTTAATTCA CTTTCTGTTT GGGCTTGGAT GTTCTTATTC
GGCCATTTAG TATGGGCCAC TGGGTTTATG TTCTTGATCT CATGGCGTGG CTACTGGCAA
GAATTAATCG AAACATTAGT TTGGGCCCAC CAGCGTACTC CAATAGCAAA CCTTGTAGGT
TGGAGAGATA AACCTGTTGC ACTTTCAATT GTTCAAGCAA GACTAGTGGG ATTAGCTCAT
TTCACAATTG GAAATATTCT CACTTTCGGA GCATTTGTAA TAGCTTCTAC TTCAGGTAAG
TTTGGATAA
|
|---|
| Protein sequence | MATKFPAFNQ GLAQDPTTRR IWYGIATAHD FESHDGMTEE KLYQKLFSTH FGHLAIIALW
VAGNLFHIAW QGNFEQFVLD PTHVRPIAHA IWDPHFGSGI TEAMTQAGAD GPVNIAYSGL
YHWWYTIGMR TNEQLFQASI FMSILACWTL FAGWLHLQPK FRPSLAWFKN NESRLNHHLA
VLFGFSSIAW TGHLVHVAIP ESRGIHVGWD NWLTVLPHPA GLTPFFTLNW GAYAQNPDSL
EQVFGTAEGA GTAIFTFLGG LHPQSEALWL TDIAHHHIAI GTVFIIAGHM YRNTFGIGHS
LKEITEAHNT RHPLDPHKGS FGINHDGLYE TVTNSLHFQL GLALAALGVA TSLVAQHMGA
LPSYAFIARD YTTQSALYTH HQYIAMFLMV GAFAHGAIFF VRDYDPELNK DNVLARVLGT
KEALISHLSW VTMILGFHTL GIYVHNDVVV AFGNPEKQIL IEPVFAQFVQ AAQGKMMYGF
NALLSDPTSA ASVAANSLPG NHYWMDLINR QDALSAFLPI GPADFLVHHA IALGLHTTAL
ILIKGALDAR GTKLIPDKKD LGYAFPCDGP GRGGTCDSSS WDAMYLAMFW ALNLIAWVTF
YWHWKHLAIW QGNVAQFNES GTYLMGWFRD YLWLNSAQLI NGYNPFGVNS LSVWAWMFLF
GHLVWATGFM FLISWRGYWQ ELIETLVWAH QRTPIANLVG WRDKPVALSI VQARLVGLAH
FTIGNILTFG AFVIASTSGK FG
|
|---|
| |