Gene P9515_16651 details

Gene Information

• Locus tag: P9515_16651
• Symbol: rpoB
• ID: 4720468
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9515
• Kingdom: Bacteria
• Replicon accession: NC_008817
• Strand: -
• Start bp: 1457453
• End bp: 1460746
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640081357
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001011979
• Protein GI: 123966898
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGTA GCGCTTTACA GATAGCTAAA ACAGCAACTT ATCTACCAGA TTTAGTTGAA 
GTACAAAGGG CAAGCTTTAA ATGGTTTCTG GAAAAAGGCT TAATAGAAGA ATTGAAAAGC 
TTTTCTCCAA TTACTGATTA CACAGGTAAA TTAGAATTAC ATTTTATTGG TGAAGAATAT 
AGGTTAAAAA GGCCTAGACA TGATGTTGAA GAAGCTAAGA GAAGAGATGC AACTTTTGCT 
TCCCAAATGT ATGTAACCTG TAGATTAATA AATAAAGAAA CAGGAGAAAT AAAAGAACAA 
GAAGTCTTTA TTGGTGAATT ACCTTTAATG ACAGAGAGGG GAACCTTTAT TATAAATGGA 
GCTGAAAGAG TAATAGTCAA TCAAATAGTT CGAAGTCCGG GGGTCTATTT CAAAGATGAA 
ATGGATAAAA ATGGTAGGAG GACTTATAAC GCTAGCGTTA TCCCTAATAG AGGAGCCTGG 
CTAAAATTTG AGACAGATAA AAATAATTTA CTCTATGTAA GGGTCGACAA AACAAGGAAA 
ATTAATGCGC ACGTACTGAT GAGAGCTATG GGACTCTCAG ATAATGATGT TGTTGATAAA 
TTAAGACATC CTGAGTTTTA TAAACAATCA ATTGATGCGG CTAATGATGA AGGAATAAAT 
TCCGAAGATC AAGCATTATT AGAACTTTAC AAAAAATTAC GACCAGGAGA ACCTCCTTCC 
GTTTCTGGTG GGCAACAACT TCTACATAGC AGATTTTTTG ATCCTAAAAG ATACGATTTA 
GGAAGAGTGG GTAGATATAA AATTAATAAA AAATTGAGAT TAACTGTTCC AGATAATGTA 
AGAACTCTTA CACACGAGGA TGTCCTTTCA ACAATTGACT ACCTTATAAA TCTGGAACTT 
GATATTGGGG GTGCAAGTTT AGATGATATT GACCATTTAG GTAATAGAAG AGTTAGATCT 
GTTGGAGAAC TTCTTCAAAA CCAAGTTAGA GTTGGTCTTA ACCGATTAGA GAGAATAATT 
AAAGAAAGAA TGACTGTTGG TGAGACAGAT TCACTTACTC CTGCTCAGCT AGTAAATCCC 
AAACCATTAG TAGCAGCTAT TAAAGAATTT TTTGGATCCA GTCAATTAAG CCAATTTATG 
GATCAAACAA ATCCATTAGC TGAGTTGACC CATAAAAGAA GAATTTCAGC ATTAGGACCT 
GGCGGTTTAA CTCGAGAAAG AGCAGGTTTT GCTGTTAGAG ATATTCATCC TTCACACTAT 
GGAAGATTAT GCCCTATTGA AACCCCTGAA GGCCCAAATG CAGGGCTCAT TAATTCTCTT 
GCAACACATG CAAGAGTTAA TGAATATGGT TTTATTGAAA CACCTTTTTG GGAAGTAGAA 
AAAGGTAGGG TCATTAAAGA AGGCAAACCT GTTTATCTTT CTGCTGACTT AGAGGATGAA 
TGTAGAGTGG CTCCTGGTGA TGTGGCGACT GATAAAAGCG GTAATATTCT CGCAAATTTA 
ATTCCGGTCA GATATAGACA AGACTTTGAG AAAGTACCTC CCCATCAAGT TGATTATGTT 
CAGCTTTCTC CTGTTCAAGT TATTTCAGTA GCTACTTCTC TTATTCCCTT CTTGGAACAT 
GATGATGCTA ATAGAGCATT AATGGGTTCC AATATGCAAC GTCAAGCTGT TCCATTATTA 
AGACCTGAAC GTCCACTAGT TGGGACTGGA TTGGAATCCC AAGTTGCAAG AGACTCCGGT 
ATGGTGCCAA TCACAAAAGT CAATGGAATA GTTTCTTATG TCGACGCTAA TGAGATAGTT 
GTAAAAGATG TGGATGGTAA TGAACACGTT CATTATCTTC AAAAATATCA GCGATCTAAT 
CAAGATACAT GTTTAAATCA AAGGCCAATT GTGAAAAATG GAGATCAAGT TATTTCTGGC 
CAAGTTCTTG CTGATGGTTC CGCTTGTGAA GGTGGCGAAA TAGCTTTAGG ACAGAATGTT 
TTAATCGCCT ATATGCCGTG GGAAGGCTAC AACTATGAAG ATGCAATATT AGTAAGTGAA 
AGGATGGTTA CTGATGATCT TTATACTTCG GTACACATTG AAAAATATGA AATAGAAGCC 
AGACAAACTA AATTAGGTCC TGAAGAAATC ACTAGGGAAA TTCCTAATAT TTCTGAAGAA 
AGCTTGAATA ATCTTGATGA AATGGGAATC ATCAGAACAG GTGCCTTTGT TGAAAGTGGT 
GATATTCTCG TAGGAAAAGT TACTCCAAAG GGGGAATCAG ATCAACCACC TGAAGAAAAA 
CTTTTAAGAG CTATATTTGG CGAAAAAGCA CGAGATGTAA GAGATAATTC TCTTAGAGTT 
CCTAAAACAG AAAAAGGAAG AGTTTTAGAT GTTCGTATAT ATACTAGGGA GCAAGGTGAT 
GAACTTCCTC CTGGTGCAAA TATGGTTGTA AGAGTTTATG TCGCTCAAAG GAGAAAAATA 
CAGGTGGGAG ATAAGATGGC TGGTAGGCAT GGTAACAAAG GCATAATAAG TAGAATTTTA 
CCTAGAGAAG ATATGCCCTA TTTACCTGAT GGTACTCCAG TTGATATCGT CTTAAATCCT 
CTTGGTGTTC CAAGTAGAAT GAATGTGGGC CAAGTTTTTG AATTATTGAT GGGCTGGGCA 
GCATCTAACT TAAATTGTAG AGTTAAAGTT GTTCCTTTTG ATGAGATGTA TGGAGCTGAA 
AAATCACATC AAACCGTTCA AGCTTTTTTA AAGGAAGCTT CAAAGCAAAA TGGCAAGGAT 
TGGGTTTATA ATCCTGAAGA TCCTGGCAAG TTGTTACTCA AAGATGGTAG AACCGGGGAA 
CCTTTTGATC AACCTGTTGC TGTTGGATAT TCTCATTTCC TAAAGCTGGT CCACCTAGTC 
GATGATAAGA TTCATGCTAG GTCAACAGGT CCTTACTCTC TAGTTACTCA GCAGCCGTTA 
GGTGGTAAGG CTCAGCAAGG CGGACAAAGA CTTGGAGAGA TGGAAGTTTG GGCTTTAGAG 
GCATATGGAG CGGCTTATAC TTTGCAAGAA TTGTTAACAG TCAAATCTGA TGATATGCAA 
GGAAGAAATG AAGCATTAAA CGCAATAGTT AAAGGAAAAC CTATACCTAG ACCAGGAACT 
CCGGAATCAT TTAAAGTTTT AATGAGAGAA TTACAATCTT TAGGTCTGGA TATAGGTGTA 
TATACAGATG AAGGTAAGGA GGTTGATTTA ATGCAAGATG TTAATCCTAG AAGGAATACT 
CCTTCGAGGC CTACCTATGA ATCTCTAGGA ACCTCTGAAT ATGAGGAAGA TTAA 

 

Protein sequence

MSSSALQIAK TATYLPDLVE VQRASFKWFL EKGLIEELKS FSPITDYTGK LELHFIGEEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLI NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE MDKNGRRTYN ASVIPNRGAW LKFETDKNNL LYVRVDKTRK 
INAHVLMRAM GLSDNDVVDK LRHPEFYKQS IDAANDEGIN SEDQALLELY KKLRPGEPPS 
VSGGQQLLHS RFFDPKRYDL GRVGRYKINK KLRLTVPDNV RTLTHEDVLS TIDYLINLEL 
DIGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWEVE KGRVIKEGKP VYLSADLEDE 
CRVAPGDVAT DKSGNILANL IPVRYRQDFE KVPPHQVDYV QLSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LESQVARDSG MVPITKVNGI VSYVDANEIV 
VKDVDGNEHV HYLQKYQRSN QDTCLNQRPI VKNGDQVISG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RMVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNISEE 
SLNNLDEMGI IRTGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PKTEKGRVLD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLNCRVKV VPFDEMYGAE 
KSHQTVQAFL KEASKQNGKD WVYNPEDPGK LLLKDGRTGE PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDEGKEVDL MQDVNPRRNT 
PSRPTYESLG TSEYEED