| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_14411 |
|---|
| Symbol | trmD |
|---|
| ID | 4718727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | - |
|---|
| Start bp | 1275493 |
|---|
| End bp | 1276716 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640081128 |
|---|
| Product | putative bifunctional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_001011755 |
|---|
| Protein GI | 123966674 |
|---|
| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase
[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATT TGAATTTTGA AGTAATTACT TTGTTCCCCA AAGCTTTTGA ATTAATAAAT
AATTTAGGTG TAATAACAAG AGCTTTAGAG AAAAAGTTAA TCAAGGTGAA CTTACATGAT
TTAAGAGAAT ACGGAGAAGG TTCGTATAGA CAAGTCGATG ACAAGCCTTA TGGAGGAGGT
TCGGGGATGG TTTTAAAACC AGGACCGATT TTTAAGGCTC ATGATTCAAT AAAAAAATTA
CCTAATATTA AAACTTTATT AATGAGTCCA CAAGGTAAAG TTTTAAAGCA GCAGGATCTT
TTAAGATGGT CTACTTTAGA TCAATTAATA ATTATATGCG GGCAATATGA AGGTTTTGAT
GAAAGAGTTA GATGCTTGGC TGATGAAGAA GTTTCTATAG GTGATTATGT ACTTTCAGGA
GGGGAAATTC CTGCTATGAC TATAATTAAT GGTTTGACAA GATTATTACC TGGAACCCTT
GGAGATCCTA GATCTTTAAT AGATGAGAGT CATAATTCAT CTTTATTAGA ATATCCGCAT
TATACGAGAC CTCTAATTTT TAGAGAAATG AAAGTACCAG ATATTCTTGT TAGTGGTAAT
CATGAAGAGA TTGAATTATG GCGTAAACAA AAAATGTTTG AAAGAACATT AGAGAGAAGA
AATGACTTGA TTTCGTATGA AGACTATAAA AAATCACCAA AAAGTAAGAG AATAGATGAA
GACTCAAATG AAATGATGAA ATTCCGTATA GGAAATGGAT ATGATATTCA CCGATTAGTA
AAGGGTAGAA ACTTAATCAT TGGAGGAGTT AAATTGCAAC ACCCTGATGA TTTAGGACTG
GATGGTCATA GCGACGCTGA CGTTCTTAGC CACTCAATAA TGGATGCATT GTTAGGAGCT
CTATCTCTTG GTGACATCGG AAAATACTTC CCTCCATCTG ATCAAAAATG GAAAGATGTA
GATAGTTTAT TTTTGTTATC TAAAGTTATC GAATTAATTA GAAATCAAGG TTGGGAAGTA
AATAATATTG ATAGTGTTAT TGTGGCAGAA AGACCAAAAA TTAAACCTTT TGTGGAATTA
ATGAAGAATA ATATTTCTGA TATCTTGCAA ATCGAAGATA GTTTTATTGG AATAAAGGCT
ACTACAAATG AGAGATTGGG TCCTGAGGGT AGAGAAGAGG GGATTAGTTG TCACTCTGTA
GTATTGCTTG AGAAAAAAGA ATGA
|
|---|
| Protein sequence | MTNLNFEVIT LFPKAFELIN NLGVITRALE KKLIKVNLHD LREYGEGSYR QVDDKPYGGG
SGMVLKPGPI FKAHDSIKKL PNIKTLLMSP QGKVLKQQDL LRWSTLDQLI IICGQYEGFD
ERVRCLADEE VSIGDYVLSG GEIPAMTIIN GLTRLLPGTL GDPRSLIDES HNSSLLEYPH
YTRPLIFREM KVPDILVSGN HEEIELWRKQ KMFERTLERR NDLISYEDYK KSPKSKRIDE
DSNEMMKFRI GNGYDIHRLV KGRNLIIGGV KLQHPDDLGL DGHSDADVLS HSIMDALLGA
LSLGDIGKYF PPSDQKWKDV DSLFLLSKVI ELIRNQGWEV NNIDSVIVAE RPKIKPFVEL
MKNNISDILQ IEDSFIGIKA TTNERLGPEG REEGISCHSV VLLEKKE
|
|---|
| |